Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01498 ATGTCCTCTTCCATTCCCTCCCCTCACCTCACCCACCTTGGCCTTGGCTACTCCATCGCCATAGCCCTTGCCTTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCCTCCTACCTCTGCTGTCGCGCCACCCGCCATCGCAACCAAACCACCGCTGTCACCGCCGCCGCCGCCAACCCCTCCGACGGCGTTGTCCTGCCACGTGTCATCTTCGTGGCGGAGGACGACGACGACGAGGAGGCCAACGTTGCGTTGGGGCTCGACCAGAGTGTGATTAATTCCTATCCCAGGTTTCAGTTCGAGAGGGACAACGCGCGGAATAGTAACGGCAATAACAACACGTGCTCCATATGTTTGTGCGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGCCGCCATTTCTTTCACCTCTGCTGCCTCGATTCCTGGCTCAGACTCAGAGGCTCCTGCCCCGTTTGCCGCAACTCGCCGCTCCCGACGCCGCTCTCCACGCCACTGCAGGAGGTGGTGCCGCTCTCTCAGTACGCCGCCGATAGAAGGCGAAGTAGGTGA 558 0.6057 MSSSIPSPHLTHLGLGYSIAIALAFLFLLSTLLLSSYLCCRATRHRNQTTAVTAAAANPSDGVVLPRVIFVAEDDDDEEANVALGLDQSVINSYPRFQFERDNARNSNGNNNTCSICLCEYKDSEMLRMMPECRHFFHLCCLDSWLRLRGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRSR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01498 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Lapu1g01498 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 160 IPR013083 -
Lapu1g01498 185 Pfam Ring finger domain 112 156 IPR001841 -
Lapu1g01498 185 SMART ring_2 114 155 IPR001841 -
Lapu1g01498 185 PANTHER RING-H2 FINGER PROTEIN ATL67 7 184 IPR044289 GO:0016567|GO:0016740
Lapu1g01498 185 SUPERFAMILY RING/U-box 113 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01498 Lapu-Chr1 27744698 27745503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01498 7 175 C3H Transcription Factor Family AT5G07040 44.118 5.36e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01498 - - gmx:100793332 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01498 1 27744698 27745503 Lapu1g01498 1 27744698 27745503 ECH