Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01497 ATGTCATCGTCTCCTTCTCCCTCCCTCTCCGACGAGCCACCCATGAACAACAACCTCTACAACAACAATGGACTAGACATATTCACCAAGTTGTTCCTATTGCTTATCTTTCTCTCTCTCTTCATTCGTGTGTGTTACGTGTACATTAGCATGCGACGTGACCAACATGCAAACGACAACATAAGCAATAGCATCGCATCCATGATCCATAATGATCCAAACAATAACCTCACGGGGCTACCCTCTAACGTCATCAAATCCTACCACACTTTCCCTTATAGCAAAACCAGTGGTGTGGGAACAACGTGCGACCATGATACCACGTGCTCCATATGTATTGAGGATTACGAGGAATCGGAGATGTTAAGGATTATGCCGCAATGTCGCCACTACTTTCACCGAGATTGTGTTGACGCCTGGTTGAAGATTTATGTTTTTGGGGTGTATGGCTATAAAGAGAATAGGAAAAAAGAGAGAGGAAGAGATAAATAA 492 0.437 MSSSPSPSLSDEPPMNNNLYNNNGLDIFTKLFLLLIFLSLFIRVCYVYISMRRDQHANDNISNSIASMIHNDPNNNLTGLPSNVIKSYHTFPYSKTSGVGTTCDHDTTCSICIEDYEESEMLRIMPQCRHYFHRDCVDAWLKIYVFGVYGYKENRKKERGRDK* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01497 163 ProSiteProfiles Zinc finger RING-type profile. 109 140 IPR001841 -
Lapu1g01497 163 Pfam RING-like zinc finger 109 137 IPR001841 -
Lapu1g01497 163 SUPERFAMILY RING/U-box 102 143 - -
Lapu1g01497 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 145 IPR013083 -
Lapu1g01497 163 PANTHER RING-H2 FINGER PROTEIN ATL67 10 143 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01497 Lapu-Chr1 27736752 27737505 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01497 1 145 Rapid Response to Elicitors AT3G05200 28.378 4.28e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01497 - - vun:114182932 210.69