Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01493 ATGGCAAAGCTTTTTACAGCCGAGGAGCTACAAAGAGCAACAGATAACTACAACAGTAGTAGATTTCTTGGTCAGGGTGGCTATGGTACAGTGTACAAAGGAATGTTACCAGATGGAACCATAGTTGCAGTTAAAAAGTCCAAAGAGATTGGAAGTAACCAGATAGAGACTTTTGTCAATGAAGTGGTGATTCTGTCCCAGATCAACCACAGGAACATTGTCAAACTCTTTGGTTGTTGTCTTGAGACAGAAACTCCTTTACTAGTCTATGAATTCATTCCCAATGGAACACTTTCTCGCCACATCCATAGTAGAGACAATGAGCCCACCCTTCCTTGGGAGAGTCGCCTTAGAATTGCATGTGAGGTTGCTGGAGCAGTGGCATATATGCATTTTGCATCTTCTATTCCCATTTTCCATAGAGATATCAAACCTACCAACATACTTTTAGACAGTAACTACAGTGCCAAAGTCTCTGATTTTGGAACATCAAGATCAGTGCCACTAGATAAGACTCACTTGACCACTGTTGTGGGAGGAACTTTTGGGTACATTGACCCTGAATACTTTCAGTCTAGTCAATTTTCAGATAAAAGTGATGTGTATAGTTTTGGGGTTGTGCTTGTAGAGCTCTTAAGTGGGAGAAAGCCAAATTCATTCTTAGAGGAAGATGAGGGTCAGAATCTGATTGCACAGTTCATTTCTCTAATGAAGGAGAACCAAGTTTATGAAATTTTTGATGGCAGGGTGGCTAAGGAAGCAAGGAAAGGCGACATTCTTGTCATTGCAAACCTTGCATTGAGATGCTTGAGACTCAATGGGAAGAAAAGACCAACAATGAAAGAAGTTTCACTGGAATTAGAAGCACTAAGAAATGTACAGTGTTCCTTACAGATGAACCATGACCGTGAGCACACAAGTAGTGACATAGTTAAAGAATGCACAGAGGAAAGCATGCCACTATGCTTAAAACTAGAGTCCATGTCCTTCTAG 993 0.4089 MAKLFTAEELQRATDNYNSSRFLGQGGYGTVYKGMLPDGTIVAVKKSKEIGSNQIETFVNEVVILSQINHRNIVKLFGCCLETETPLLVYEFIPNGTLSRHIHSRDNEPTLPWESRLRIACEVAGAVAYMHFASSIPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPLDKTHLTTVVGGTFGYIDPEYFQSSQFSDKSDVYSFGVVLVELLSGRKPNSFLEEDEGQNLIAQFISLMKENQVYEIFDGRVAKEARKGDILVIANLALRCLRLNGKKRPTMKEVSLELEALRNVQCSLQMNHDREHTSSDIVKECTEESMPLCLKLESMSF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01493 330 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Lapu1g01493 330 FunFam Wall-associated receptor kinase 2 93 310 - -
Lapu1g01493 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lapu1g01493 330 Pfam Protein kinase domain 17 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01493 330 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 298 IPR045274 GO:0007166
Lapu1g01493 330 CDD STKc_IRAK 23 290 - -
Lapu1g01493 330 Gene3D Transferase(Phosphotransferase) domain 1 93 316 - -
Lapu1g01493 330 PIRSF ILK 6 306 - -
Lapu1g01493 330 ProSiteProfiles Protein kinase domain profile. 17 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01493 330 SUPERFAMILY Protein kinase-like (PK-like) 4 287 IPR011009 -
Lapu1g01493 330 SMART serkin_6 17 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01493 330 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Lapu1g01493 330 FunFam Wall-associated receptor kinase 2 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01493 Lapu-Chr1 27719374 27720405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01493 1 292 Receptor kinase-like Gene Family AT1G16130 61.301 5.39e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lapu1g01493 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01493 - - gmx:100792803 571.237