Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01475 ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTTCCTCAAGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACTGGTCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCTAACAGAAAGCTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAGACGGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAACATTTTAGGCTATCCACTCCGCCCAAACGAGCCTGAATGTGCGTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCCCAACCAAACAATATGGTGCTTTCCATGAGAAGTTCTCCTGTTTATCCTACTGTCCAATCTCCAACTACACCAGGTCAGCAGTCTTATGCGACAGGAATTACAAATTGGCCTAGTTCATCGTATATTCCTAGCCCACGTTGGCAAAGTCCTTCAAGTTATGCTCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGCTGGAGTGCGTACAGTGGTCAAATGGGATCAGATAGTTCACAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTAATCGGCAAAGTGAACCAACAAATGCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGTTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAACCAGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCTATAGGCCTTCCATTACGTCCTGGAGAGCCTCTCTGTGTCTTCTATTCACGTTATGGTATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAGTCTTCACCTATAACATATCTGCATCACCTTCAGCTGATGCCCCAGGGCGGCGGATGTTAGGTTCTTCATCAGGAACTTCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAATCCAAGGAGGCTTTCATTATCAGAGACTAGACAGATTCCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1281 0.4465 MEFDAAIPVSREHLPQDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNEPECAYYLRTGQCKFGNTCKFHHPQPNNMVLSMRSSPVYPTVQSPTTPGQQSYATGITNWPSSSYIPSPRWQSPSSYAPLILPQGMVSVPGWSAYSGQMGSDSSQQTMGNGQSYGTNRQSEPTNAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNISASPSADAPGRRMLGSSSGTSALNLSSEGLVESGSANPRRLSLSETRQIPSGDDNIDEEG* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01475 426 SUPERFAMILY CCCH zinc finger 289 315 IPR036855 GO:0046872
Lapu1g01475 426 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Lapu1g01475 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Lapu1g01475 426 Gene3D - 278 361 - -
Lapu1g01475 426 PANTHER PROTEIN PHOSPHATASE RELATED 26 379 - -
Lapu1g01475 426 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Lapu1g01475 426 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Lapu1g01475 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Lapu1g01475 426 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Lapu1g01475 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Lapu1g01475 426 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Lapu1g01475 426 Gene3D - 115 164 - -
Lapu1g01475 426 FunFam CCCH type zinc finger protein 284 369 - -
Lapu1g01475 426 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
Lapu1g01475 426 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Lapu1g01475 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Lapu1g01475 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872
Lapu1g01475 426 MobiDBLite consensus disorder prediction 391 426 - -
Lapu1g01475 426 Gene3D - 36 114 - -
Lapu1g01475 426 MobiDBLite consensus disorder prediction 391 416 - -
Lapu1g01475 426 MobiDBLite consensus disorder prediction 228 262 - -
Lapu1g01475 426 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Lapu1g01475 426 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Lapu1g01475 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Lapu1g01475 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Lapu1g01475 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Lapu1g01475 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Lapu1g01475 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Lapu1g01475 426 FunFam Zinc finger nuclease 2 37 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01475 Lapu-Chr1 27546534 27555447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01475 19 423 C2H2 Transcription Factor Family AT3G02830 62.347 1.63e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu1g01475 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01475 - - gmx:100786261 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01475 1 27546534 27555447 Lapu1g01475 1 27546534 27555447 ECH