Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01445 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACATCCTTCCAGTCAAGATCACTCTCAAACAGCACCTTCTCGTTTTGGTTTCAACCCTGATGGAATCTCAAGCACTGATGTTGCAGGAGACTGTTTTGATCTCACTTCTGACTCAACTCCTCATTTACTCAACCTCCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATAACATTCACACCGCTCAAGATTGGAAGGAGAACTACAACAGTCAAAACTTGCTATTGGGAACTTCATGCAGTAACCAAAACATGAACACCAACCAACATCAACAACAGCCAAAGCTTGAAAATTTCCTCGGTGGACATTCATTTGGAGAACATGACCAAACTTACGGTGGTAACTCAACCTCAACAGATTACATGTTTCCGACTCAGCCAGTGGTGGCCAGCGGCAGCAGTAGTACCAACAATAGTAACTCTATAGGGTTATCCATGATAAAAACATGGTTGAGGAACCAACCACCTCACTCCGAAAACAACAATGAAAGTGGTCGGAGTAGTGGTAGTAGTGTGCAGACTCTATCACTTTCTATGAGCACTGGTTCACAATCTAGCACTTCACTTCCCATTCTCTCTGCAAATGTGGACAATGGAGAGAGTTCTTCAGATAACAAACAGCCACTAACCACGGCTGCACTTGATACCACCCCAACAGGAGCCAGTGAATCTGCACCCAGAAAGTCCATTGACACGTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGACATAGGTGGACTGGGAGGTACGAGGCTCATCTGTGGGATAATAGCTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTCCCAATTAGTCACTATGAGAAAGAGGTGGAAGAAATGAAGCACATGACCAGACAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAAGCTAGGATTGGGAGAGTTGCAGGCAACAAGGATCTCTATCTGGGAACATTCAGCACTCAAGAAGAAGCAGCAGAGGCATATGATGTTGCGGCCATCAAATTCCGAGGACTGAGTGCTGTTACAAACTTTGACATGAGCAGATATGATGTCAAGAGCATACTTGAGAGCACTACTTTGCCAATTGGCGGTGCTGCCAAGCGTTTGAAGGATATGGAACAGGTGGAACTGAACGTAGAAGGTCATAGAACAGACCAAGAAGGTCATAGCAGCATCTTGAACTCTCACCTAACTCAAGGAATCAGTAACAACTATGCAGGAGGAACAACAGCGACTCACCATAACTGGCACAATGGTCTTTCATTCCACCAACCTCAACCTTGCACCACCATATACCCTTATGGACAGAGACTGTGGTGCAAGCAAGAACAACAAGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGATATTCATCAACTACAGCTAGGGAATAATGGCACACATAACTTTTTTCACACAAATTCCGGGCTGCACCCTATCATGAACATGGAGTCTGCTTCCATTGACAACAGCTCTTCATCTAACTCGGTAGTTTATGATGGCTATGGAGGTGGTGGGGGCTATGTGATTCCTATGGGGACTACTACTGTTGTTGCAAGTGATGGTGATCATAATCAAAGAGGCAATAATGGTTTTGGTGATAATGAGATGAAGGCACTTGGTTACGAAAGTGTTTACGGATCCAATGATGCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCCCAACAGCAATCATCTTCTGTAGATGCAGTCAAGGCTAGTTCATATGATCAAGGTTCTGCATGCAACACTTGGGTTCCAACTGCTATTCCAACTCTTGCACCTAGGTCTACCAGTATGGCTCTCTGCCATGGCGCTCCACCCTTCTCGTTATTGCATGAATAG 2058 0.4422 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFGFNPDGISSTDVAGDCFDLTSDSTPHLLNLPSYGIYEAFHRNNNIHTAQDWKENYNSQNLLLGTSCSNQNMNTNQHQQQPKLENFLGGHSFGEHDQTYGGNSTSTDYMFPTQPVVASGSSSTNNSNSIGLSMIKTWLRNQPPHSENNNESGRSSGSSVQTLSLSMSTGSQSSTSLPILSANVDNGESSSDNKQPLTTAALDTTPTGASESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEQVELNVEGHRTDQEGHSSILNSHLTQGISNNYAGGTTATHHNWHNGLSFHQPQPCTTIYPYGQRLWCKQEQQDNSDTSHPLSYPDIHQLQLGNNGTHNFFHTNSGLHPIMNMESASIDNSSSSNSVVYDGYGGGGGYVIPMGTTTVVASDGDHNQRGNNGFGDNEMKALGYESVYGSNDAYHAHARNLYYLSQQQSSSVDAVKASSYDQGSACNTWVPTAIPTLAPRSTSMALCHGAPPFSLLHE* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01445 685 CDD AP2 353 414 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 SMART rav1_2 354 418 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 SMART rav1_2 255 324 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 FunFam AP2-like ethylene-responsive transcription factor 353 414 - -
Lapu1g01445 685 FunFam AP2-like ethylene-responsive transcription factor ANT 254 320 - -
Lapu1g01445 685 Gene3D AP2/ERF domain 255 320 IPR036955 GO:0003700|GO:0006355
Lapu1g01445 685 Gene3D AP2/ERF domain 354 414 IPR036955 GO:0003700|GO:0006355
Lapu1g01445 685 ProSiteProfiles AP2/ERF domain profile. 354 412 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 SUPERFAMILY DNA-binding domain 353 414 IPR016177 GO:0003677
Lapu1g01445 685 PRINTS Ethylene responsive element binding protein signature 256 267 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 SUPERFAMILY DNA-binding domain 254 320 IPR016177 GO:0003677
Lapu1g01445 685 CDD AP2 254 320 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 ProSiteProfiles AP2/ERF domain profile. 255 318 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 Pfam AP2 domain 354 404 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 Pfam AP2 domain 255 310 IPR001471 GO:0003700|GO:0006355
Lapu1g01445 685 MobiDBLite consensus disorder prediction 168 249 - -
Lapu1g01445 685 MobiDBLite consensus disorder prediction 1 35 - -
Lapu1g01445 685 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01445 Lapu-Chr1 27304284 27308400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01445 110 439 AP2-EREBP Transcription Factor Family AT5G17430 64.565 2.17e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lapu1g01445 AP2 3.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01445 K09285 - gmx:100797584 1137.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01445 1 27304284 27308400 Lapu1g01445 1 27304284 27308400 ECH