Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01435 ATGGCTCAGCCAAGAAAGAGGGTTAGAAGGTCTTGTGAGACTCAGCATCACATCATTGCTGAGAGGAAAAGGAGACAGGAGCTAACAGGGAGCATCATAGCACTTTCAGCTACTATTCCTGGACTCAAGAGGATGGACAAGGCTTATGTACTTCGTGAAGCTGTGAATTACACAAAACAACTTCAAGAGAGAGTTAAAGAGTTGGAAAATCAAAACACTGACAAAAGAGTGCATCATTCATCAACACTGGTGAGGAAATCTCAAGCCTCCTCAAATCAAAGCAGTGAAACCAACAAAGAATCACTTTTTGAGGTTGAAGCAAGAGTGCTAGATGAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTCTGCAAAATACATGCCTTGCTCGAAAAGCTCCATTTTTCTCCAACCAGTAGCAGTGTATTACCATTTGGCACTTCTACTCTTACAATCCACATCATTGCTCAGATGGATGAGGAATGCAGAATGAGCATGGATGAGCTAGTGAAGAATCTGAGAGAATATCTGGTGGAGGTGTATGACATGCAACAGTGA 570 0.4211 MAQPRKRVRRSCETQHHIIAERKRRQELTGSIIALSATIPGLKRMDKAYVLREAVNYTKQLQERVKELENQNTDKRVHHSSTLVRKSQASSNQSSETNKESLFEVEARVLDEEVLIGIHCEKQKDIVCKIHALLEKLHFSPTSSSVLPFGTSTLTIHIIAQMDEECRMSMDELVKNLREYLVEVYDMQQ* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01435 189 MobiDBLite consensus disorder prediction 83 98 - -
Lapu1g01435 189 Pfam Helix-loop-helix DNA-binding domain 15 62 IPR011598 GO:0046983
Lapu1g01435 189 PANTHER BHLH TRANSCRIPTION FACTOR 4 181 - -
Lapu1g01435 189 SMART finulus 18 67 IPR011598 GO:0046983
Lapu1g01435 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 85 IPR036638 GO:0046983
Lapu1g01435 189 Coils Coil 51 78 - -
Lapu1g01435 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 61 IPR011598 GO:0046983
Lapu1g01435 189 Gene3D - 4 79 IPR036638 GO:0046983
Lapu1g01435 189 MobiDBLite consensus disorder prediction 68 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01435 Lapu-Chr1 27184292 27186335 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01435 2 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.677 7.95e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g01435 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01435 - - gmx:100806078 276.944