Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01434 ATGGATGAGTTCTTCCATTGCAATGAAGAAGAGTTTCTCAAAGACATGATTGTTCAGCAACCTGAAAGCAATCCATCTTCTTCCTTCCTTCAAAGCAACATGAACTTCAAACCTTCATCATTTCCTACGGGTTATGTTCTGTCTTTTGATAACCCTAATTTTGAAGCACATCAAAACCACTCTTCCAAAAGCATGGCACAGAGGCAAAACTCCATCCCAGAACCAAGAACACAACATCACATATTGGCTGAGAGAAAAAGAAGAGAGGAATTGACTAAGAACATTATGGAACTTTCAGCCATGATTCCTGGGTTGAAGAAGACAGACAAAATCACTGTAGTACGTGAAGCTGTGAACTATTTAAAACGACTTCAAGAGCAAGTGAAAGAGTTAGAAAATCAAAAGAGACAGCAATGTATGAATTCGACATCACTCATCAAGAAATCAAATCTCTTCATAAATGATTACGTGGAACAAGAAGTTCCCCAGATGAAAATATCACTTTTAGACAAAGAAGTGCTTATTGGAATTTATTGTCAGAATCCAAACTACACTTTGCTCAAAGTCTTCGTTTTGCTGCATAATCTCCATCTTTCTGTGACATGTTCCAGTGTTTTGCCATTTGGAACTTCAACTTTTAAACTTACCATTATTGCTAAGATGGATGACGAACATAACATGATCATGGATGATCTAATAAAAGCACTGCGAGTACACTTACAGAGTTTGAAAAGTCAGAGATGTGTGAAGTGTAGTAGTGAATGA 765 0.3699 MDEFFHCNEEEFLKDMIVQQPESNPSSSFLQSNMNFKPSSFPTGYVLSFDNPNFEAHQNHSSKSMAQRQNSIPEPRTQHHILAERKRREELTKNIMELSAMIPGLKKTDKITVVREAVNYLKRLQEQVKELENQKRQQCMNSTSLIKKSNLFINDYVEQEVPQMKISLLDKEVLIGIYCQNPNYTLLKVFVLLHNLHLSVTCSSVLPFGTSTFKLTIIAKMDDEHNMIMDDLIKALRVHLQSLKSQRCVKCSSE* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01434 254 Coils Coil 81 101 - -
Lapu1g01434 254 Gene3D - 65 140 IPR036638 GO:0046983
Lapu1g01434 254 MobiDBLite consensus disorder prediction 57 76 - -
Lapu1g01434 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 141 IPR036638 GO:0046983
Lapu1g01434 254 Coils Coil 114 141 - -
Lapu1g01434 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
Lapu1g01434 254 SMART finulus 81 130 IPR011598 GO:0046983
Lapu1g01434 254 PANTHER BHLH TRANSCRIPTION FACTOR 24 240 - -
Lapu1g01434 254 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01434 Lapu-Chr1 27169097 27171545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01434 42 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.443 9.24e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g01434 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01434 - - gmx:100807144 254.218