Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01425 ATGGCCGGCATAGACTTGGGTTCAGCATCGCATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACGTTAACAATCACGAAGGACTTGAACTAGTTACAACAAATCAAGGTCCTGGTGATATCGTTGCTCGCAGGCCGAGAGGAAGACCTCCAGGTTCAAAGAACAAGCCTAAACCTCCAGTTATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTTAGCAGTGGTTGTGATGTGTTTGACTCCGTCGCTACCTATGCAAGGAAGCGACAAAGAGGGATCTGTGTCCTCAGTGGGAGTGGCACCGTCACCAATGTGACGTTGCGGCAGCCAGCCGCAGCCGGCGCCGTTGTCACACTGCACGGAAGGTTTGAGATCCTGTCTTTGTCGGGATCATTCCTTCCACCTCCTGCTCCACCAGGTGCCACTAGTTTGACTGTATTTCTTGGTGGAGGACAGGGCCAGGTGGTGGGAGGAAACGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCCTCATCTTTCACTAATGTAGCATACGAGAGGTTGCCTTTGGATGAAGAAGAATCTATGCAGATGCAACAGGGACAATCATCTGGTGGAGGTGGTAACGGTGGTGGTGGCGGTGGAGTTGGTAATAACTCTTTTCCCGACCCTTCTTCAGGGCTTCCATTCTTCAATTTGCCCTTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCTGGTGGAAGGCAATCTTACTGA 813 0.5031 MAGIDLGSASHFVHHRLQRPDLEDDENQQDQDNNVNNHEGLELVTTNQGPGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEEESMQMQQGQSSGGGGNGGGGGGVGNNSFPDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01425 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Lapu1g01425 270 Gene3D - 83 217 - -
Lapu1g01425 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Lapu1g01425 270 CDD DUF296 84 159 IPR005175 -
Lapu1g01425 270 FunFam AT-hook motif nuclear-localized protein 83 210 - -
Lapu1g01425 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 27 226 IPR014476 GO:0003680
Lapu1g01425 270 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Lapu1g01425 270 MobiDBLite consensus disorder prediction 208 248 - -
Lapu1g01425 270 PIRSF ESCAROLA 3 265 IPR014476 GO:0003680
Lapu1g01425 270 MobiDBLite consensus disorder prediction 20 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01425 Lapu-Chr1 27097584 27098396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01425 1 267 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.784 6.69e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01425 - - vra:106758954 456.832