Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01417 ATGCCTCCTAGAGTAGTGAAGAGAGGCGCTGCGGCGAAGAAGGCATCGAGAGGATCCTCGAAGGCTGCACCTGAGAACCACCGTGAGCCTGAAACTGCGGAAGTGGGGGAGAAAAATAATGCAGAAAATTCATCTGTTGATGTTGGGGTGGAAGAGAAACACGTTGATGTGGACCAAGAGCCTCAGGAAGCTCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGGTGAACATTTAGATTTAGAGGATAATTATCCTGAGTATGAACCAGAGGAGTATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGACGAGGGAGATGAAGTTGAGGAAGAACCTGAAGAGATTATAGGTGAAGAAGAGGGTGATACAGGTGATGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGATGATGATGATGGTGAACATGCTGGCGAGGAGCATGAGCATGATGAGCATGCGCAGGTGCCTGATGTGGAGGAAGAGGAACATCGTGAAGTTGTAAAGGAGAGGCGAAAGCGGAAGGAATTTGAAGTATTTGTGGGGGGGCTAGATAAGGATGCTACTGAGCATGATCTGAAGAAGGTTTTCAGCAAAGTTGGGGTAGTTACTGAAGTCAGGCTAATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCATTCTTACGTTTTGAAACTGTAGAGCAAGCAAAAAGAGCTGTGGTGGAGCTAAAAAGTCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCTAGTCAGGACAGTGATACACTCTACTTAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTTTGAAGGAGAAACTAAAACATTATGGAGTAGAAAATGTGGAGGATCTGACTTTAGTAGAAGATGATACCAATGAGGGAATGAACCGAGGATTTGCATTTCTGGAGTTTTCATCTCGTTCGGATGCTAAGGAAGCCTATAGGCGATTGCAAAAGAGAGATGTTGTGTTTGGAGTTGATAAGCGTGCAAAGGTTTCCTTTGCTGACTCCTTTATTGATCTGGGAGATGAAATTATGGCACAGGTTAAAACTGTATTTATTGATTCACTACCTCCATCATGGGATGAAGATTATGTCCGGGATCTTCTCAAGAAATATGGAGAGATTGAAAAAATTGAGCTTGCTCGAAACATGCCAGCTGCTCGAAGGAAGAACTATGGATTTGTTACATTTAGTACACATGCTGCTGCTGTGGAATGTGCTGATAGCATTACAAGTGCAGGGTTAGGTGAAGGTGACAAAAAGGCAAAAGTTAGGGCTAGATTGTCTAGGCCTCTTTCAAAACCTATCCAGAGAGGCCGTGGGAAACATAATCCAGGGGACTTTCGTTCTGTTCGCAATTCTGGAAGATTGGCAAGGCCTTCACGGAGTCGACCTGCTCCACATAGTTATCCTGCCCGTGTGGTTAGAGGTGTTGGAAATCGTGCTCCACCAGTGAGACCTGTTACTGTGAGAAGTAGACGTCCTGTCTCATCCATGCTTGAAAGAGCCAGGCCAGTTGCTCCTCCAGCTAGAACCTATGACAGGAGATTGACTGCTCCTGCATATTCGAAAAGTGGCATTAAAAGAGACTATAGTCGACGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTACAGACTATGGCTCAAGGGTAACCTCTCAGAGGCACACATCTTATAGGGATTATCCTGCCCGAGGTTCTGACTACCCTGAGCTACACAGAAGTACATCTCGTGTTGCACCAAAGAGAGGTTATGTTGATGATGGCTATGGCCAAAGATTTGAGAGGCCTCCTCCTCCTCCTCCTCCCCATCTAAGTTATCGAGAAGGACGCTCCCGTGATTATGAAACAATATCTGGCTCAAAACGTCCTTATACTGCTATAGATGATGTTGCTCCACGGTATGATACTGGTGCTCGCCAATCAAGATCACGCTTAGATTATGACTATGGAGGTAGTGGTTCACAGTATGGAGATGGTTATGGTGATAGACTTGGAAGATCTAGTCTAGGATATAGTGGCAGCAGAAGTTCCATTTCTAATCAAGAATTACACGGGACATATGGCAGTCGACAAGGCATAAGTTATGGTGGAGGTTCTTTTGGTGGGAGTGATGGTGGTATGTACACATCAAGTTATGGTGGTGATTATGTGTCCCGTGGAAGTGATGTTGGTGGGCGATCTTATTCATCCGTGTATTCTGGTAGAGGTGTGGGTGGTGGTAGCAGCAGCTATATGGGTGGTGGTGGCTCTGGGTCTTATTATTGA 2343 0.4477 MPPRVVKRGAAAKKASRGSSKAAPENHREPETAEVGEKNNAENSSVDVGVEEKHVDVDQEPQEAPNGSAKVENNEEEVKESIDEYEKGEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQDEGDEVEEEPEEIIGEEEGDTGDEEVEYVYEEVEDDDDGEHAGEEHEHDEHAQVPDVEEEEHREVVKERRKRKEFEVFVGGLDKDATEHDLKKVFSKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQAKRAVVELKSPVINGKQCGVTPSQDSDTLYLGNICKTWKKEALKEKLKHYGVENVEDLTLVEDDTNEGMNRGFAFLEFSSRSDAKEAYRRLQKRDVVFGVDKRAKVSFADSFIDLGDEIMAQVKTVFIDSLPPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKNYGFVTFSTHAAAVECADSITSAGLGEGDKKAKVRARLSRPLSKPIQRGRGKHNPGDFRSVRNSGRLARPSRSRPAPHSYPARVVRGVGNRAPPVRPVTVRSRRPVSSMLERARPVAPPARTYDRRLTAPAYSKSGIKRDYSRREDLPPPRSRVATDYGSRVTSQRHTSYRDYPARGSDYPELHRSTSRVAPKRGYVDDGYGQRFERPPPPPPPHLSYREGRSRDYETISGSKRPYTAIDDVAPRYDTGARQSRSRLDYDYGGSGSQYGDGYGDRLGRSSLGYSGSRSSISNQELHGTYGSRQGISYGGGSFGGSDGGMYTSSYGGDYVSRGSDVGGRSYSSVYSGRGVGGGSSSYMGGGGSGSYY* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01417 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 375 432 IPR000504 GO:0003723
Lapu1g01417 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Lapu1g01417 780 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 344 IPR000504 GO:0003723
Lapu1g01417 780 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 126 276 - -
Lapu1g01417 780 CDD RRM_SF 198 269 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 571 585 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 165 181 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 1 181 - -
Lapu1g01417 780 FunFam Heterogeneous nuclear ribonucleoprotein Q 277 359 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 439 688 - -
Lapu1g01417 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Lapu1g01417 780 CDD RRM_SF 375 430 - -
Lapu1g01417 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 360 IPR000504 GO:0003723
Lapu1g01417 780 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 373 455 IPR000504 GO:0003723
Lapu1g01417 780 MobiDBLite consensus disorder prediction 750 780 - -
Lapu1g01417 780 Gene3D - 276 359 IPR012677 -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 96 164 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 20 36 - -
Lapu1g01417 780 SUPERFAMILY RNA-binding domain, RBD 274 432 IPR035979 GO:0003676
Lapu1g01417 780 Gene3D - 365 488 IPR012677 -
Lapu1g01417 780 Gene3D - 139 270 IPR012677 -
Lapu1g01417 780 Coils Coil 68 88 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 551 565 - -
Lapu1g01417 780 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 24 780 - -
Lapu1g01417 780 SMART rrm1_1 197 270 IPR000504 GO:0003723
Lapu1g01417 780 SMART rrm1_1 277 356 IPR000504 GO:0003723
Lapu1g01417 780 SMART rrm1_1 374 449 IPR000504 GO:0003723
Lapu1g01417 780 MobiDBLite consensus disorder prediction 591 606 - -
Lapu1g01417 780 Coils Coil 110 130 - -
Lapu1g01417 780 MobiDBLite consensus disorder prediction 70 95 - -
Lapu1g01417 780 SUPERFAMILY RNA-binding domain, RBD 191 274 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01417 Lapu-Chr1 27026228 27033593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01417 191 459 Eukaryotic Initiation Factors Gene Family AT1G49760 23.856 3.86e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01417 - - gmx:100811387 1059.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00836 10 10143346 10151213 Lapu1g01417 1 27026228 27033593 PCT