Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01403 ATGGAATCCATCAAGATTCTAGCCTTATGGAAGATTCTCTCCTCCTTTCTTTTGGCCTTTCTAGCACACTCTTCACTCCAAGTTGCTTGGTTTTCCAAAACAGTAGTTTTGACCTCTGCTGCCAGCACAGGAATTGTTGATGATCGAACTGCAGCTGATAACAGTGAGGCAAATGCACTGTTAAAGTGGAAATACAGCTTTGATAATAACAGCCAAGATCTCTTGTCAACTTGGAGAGGTTCTTCTTCATGCCAATGGCAAGGAATTCAGTGTGACAAATCCATGTTCGTCTCCAGCATTAATCTTGCTAATTATGGACTAACAGGTACACTTTCCGCCCTCAACTTCTCCGCTTTTCCCAACCTCCTCATCCTAAACATCTTCAACAACTCCTTTCATGGGACCATTCCCCCACAAATTGGTAACATGTCGAAAGTAAATGTGTTGAATCTTTCAAAAAATTCTTTTGACGGTTCCATCCCCCAAGCAATGTGGACACTAAGAAGTTTACAAGGCCTTGATCTTCAAGAATCTCAATTAAATGGAGAGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTAGATTTAGGTGAAAACAATTTTTCTGGCCACGTTCCTCCAGAGATTGGAAAGTTGTACAAGTTAGAGCGTCTAAATCTTAAACGTAATACACTTTCTGGTTCCATTCCTCAAGAAATTTCAATGTTGAGAAACCTTAGGTATCTTGATTTGGCAAAAAATTCTCTCTCCGGTGCTATCCCTGAAGCAATAGGCAACATGAGTAATTTAAAACAACTTCGCCTTTCTTATAACCTTCTATCTGGGTCAATCCCATCCTCCTTCTGGACCATGTCTAACTTGACGTTGGTCTTCCTTGAAGAAAATTATTTTTCTGGTTCAATCCCCGCTTCCATAGGAAACTTGGTCAATTTAGATATACTTGGACTTGATTACAACCAGTTTTCCGGACCTATTCCTTCCGCAATTGGAAAATTGACCAAGCTCACCGAGTTGTATTTACGCTCTAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAAATACTTACTTTCCAAATCAACAATCTCTCCGGAACAATTCCTGCCACAATCGGAAATTTGAAAAACCTCACCATATTAGAATTGTCCTTCAACAAACTTAGTGGAAGCGTTTCACAAGTCTTGAATAACATTCAGAACTGGTCTTTGTTGTCGATAGCGGAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTCCCTACAATACCTTAGTGCTCGTAGCAACCATTTCACTGGTCCAGTGCCAATAAGCTTAAAGAACTGCTCTAGTATTACTAGACTCAGGCTGGAAGGAAACCAATTGGAAGGAGATATAGCACAAGATTTTGGTGTATATCCAAATTTGGAATACATTGATTTGAGCGACAATAAATTCTACGGCCAAATTTCACCAAACTGGGGGAAGTGTCCTAATCTTGGTACCTTAAAGATATCCAACAATAATATTTCTGGTGGCATACCAGTACAACTTGTTGAGGCAACCAAACTAGGCAAGCTTCACCTTTCTTCTAACCACTTGAATGGAAAGATTCCAAAGGAATTAGGGAATATGAAATCGTTAATTGAACTCATGATTAGCAACAACCATCTTTCTGGAGACATTCCAAAAGAAATCGGATCACTGAAAATTCTTGAACAATTAGATCTTGGAGATAACCAGTTGAGTGGAACAATACCAAAAGAAGTTGTAGAATTGCCCAAGTTACGACACTTGAGTTTGAGCAATAATAAAATACACGGAAATATTCCCTTGGAGTTTCGCCAATTTCAGGTTCTTGAATATCTTGATCTTAGTGGGAATTTATTGAGTGGAACAATACCAACACAACTTGGAGAGGTGACGCAACTGCAGTGGTTGAATCTCTCTCACAATAATCTTTCTGGAAATATTCCATCCAGTTTTAATGGCATTTCAGGTTTGGTTTCGGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAATAATAAAGCCTTTCTTAATGCTTCAATTGAGTCATTGAAAAATAACAGAGGCTTGTGTGGCAACGTCACTGGCTTAATGCTTTGCCCAACGAGGCACATTCAGAATAGGCACAAGGGCATTCGACTAGCATTATTTATTATCTTGGGTGCTCTTGCTCTTGTATTATGTGGGGTGTCAGTTTCAATGTATATTCTCTGTCGAAAAGCAAGAATGAAAGATATCCATGACAAAGAAAATGTGCATTCAGGAAAAGTACTGTCTGAAGAAGTGTTTTCCATATGGAGTCACGATGGGAAAATTATATTCGAAAATATCATTGAAGCTACCGATAATTTCAATGACAAATATCTGATTGGACTTGGAGGGCAAGGATCTGTTTACAAAGCTGAGATGCCTACAGGCCAGGTTTTTGCGGTGAAGAAACTTCATATGGAAACAGATGAAGAGAAGCCTAATTTTAAAGCTTTTGAAAATGAAATTCAAGCTTTGACCGAAATCAGGCACCGTAACATTGTAAAGCTATGTGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTCTACGAGTTCTTGGAAGGGGGTAGCTTGGATCAAATACTAATCGATGATAAAAAGGCAGCTGCATTTGACTGGGAAGTGAGGGTAAATGTTGTTAAAGGTGTGGCCTATGCTTTATCCTACATGCATCATGATTGCTCACCACCAATAATTCACCGAGACATATCCAGCAAGAATATTCTTTTAGATTCACAACATGAAGCTCATGTCTCTGATTTTGGGACAGCTAAGATTCTAAAACCTGGTTCACGCACTTGGACCACATTTGCAGGCACTTTTGGGTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGAGTGCTTTGTCTAGAAATCATCACTGGGAAGCATCCGGGTGATCTCATTTCTTCGTTGTTATCTTCATCTTCAGCAGCGATAACTCATAACTTGCTACTAGTTGATGTAATAGACCAAAGACCTCCTTATCCTCTTAAATCGGTTGTGGGGGATGTCATTTTGGTTGCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATCCATGTTCTCGCCCAACCATGGATGAAGTAACCAAAAATCTTATGATGGGTAAATCAGCTTTAGCAGATGAGTTCCCTGATATCACACTTGCACAACTCCTCTAA 3279 0.3959 MESIKILALWKILSSFLLAFLAHSSLQVAWFSKTVVLTSAASTGIVDDRTAADNSEANALLKWKYSFDNNSQDLLSTWRGSSSCQWQGIQCDKSMFVSSINLANYGLTGTLSALNFSAFPNLLILNIFNNSFHGTIPPQIGNMSKVNVLNLSKNSFDGSIPQAMWTLRSLQGLDLQESQLNGEIPNSIANLSNLSYLDLGENNFSGHVPPEIGKLYKLERLNLKRNTLSGSIPQEISMLRNLRYLDLAKNSLSGAIPEAIGNMSNLKQLRLSYNLLSGSIPSSFWTMSNLTLVFLEENYFSGSIPASIGNLVNLDILGLDYNQFSGPIPSAIGKLTKLTELYLRSNNLSGSIPPSIGNLINLEILTFQINNLSGTIPATIGNLKNLTILELSFNKLSGSVSQVLNNIQNWSLLSIAENDFTGHLPPQICSAGSLQYLSARSNHFTGPVPISLKNCSSITRLRLEGNQLEGDIAQDFGVYPNLEYIDLSDNKFYGQISPNWGKCPNLGTLKISNNNISGGIPVQLVEATKLGKLHLSSNHLNGKIPKELGNMKSLIELMISNNHLSGDIPKEIGSLKILEQLDLGDNQLSGTIPKEVVELPKLRHLSLSNNKIHGNIPLEFRQFQVLEYLDLSGNLLSGTIPTQLGEVTQLQWLNLSHNNLSGNIPSSFNGISGLVSVNISYNQLEGPLPNNKAFLNASIESLKNNRGLCGNVTGLMLCPTRHIQNRHKGIRLALFIILGALALVLCGVSVSMYILCRKARMKDIHDKENVHSGKVLSEEVFSIWSHDGKIIFENIIEATDNFNDKYLIGLGGQGSVYKAEMPTGQVFAVKKLHMETDEEKPNFKAFENEIQALTEIRHRNIVKLCGFCSHSRFSFLVYEFLEGGSLDQILIDDKKAAAFDWEVRVNVVKGVAYALSYMHHDCSPPIIHRDISSKNILLDSQHEAHVSDFGTAKILKPGSRTWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLCLEIITGKHPGDLISSLLSSSSAAITHNLLLVDVIDQRPPYPLKSVVGDVILVASLAFSCLSENPCSRPTMDEVTKNLMMGKSALADEFPDITLAQLL* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01403 1092 Gene3D Phosphorylase Kinase; domain 1 763 880 - -
Lapu1g01403 1092 SUPERFAMILY Protein kinase-like (PK-like) 788 1072 IPR011009 -
Lapu1g01403 1092 SUPERFAMILY RNI-like 351 691 - -
Lapu1g01403 1092 PANTHER LEUCINE RICH REPEAT KINASE 2 356 1078 - -
Lapu1g01403 1092 ProSiteProfiles Protein kinase domain profile. 802 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 299 400 IPR032675 -
Lapu1g01403 1092 ProSiteProfiles Leucine-rich repeat profile. 601 622 IPR001611 GO:0005515
Lapu1g01403 1092 SMART LRR_typ_2 551 575 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 263 287 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 383 406 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 647 670 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 239 262 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 335 359 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 599 622 IPR003591 -
Lapu1g01403 1092 SMART LRR_typ_2 191 215 IPR003591 -
Lapu1g01403 1092 Pfam Leucine Rich Repeat 337 359 IPR001611 GO:0005515
Lapu1g01403 1092 FunFam MDIS1-interacting receptor like kinase 2 isoform A 305 404 - -
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 52 201 IPR032675 -
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 202 298 IPR032675 -
Lapu1g01403 1092 Pfam Leucine rich repeat N-terminal domain 54 92 IPR013210 -
Lapu1g01403 1092 SUPERFAMILY RNI-like 99 406 - -
Lapu1g01403 1092 FunFam Leucine-rich repeat receptor protein kinase EMS1 209 304 - -
Lapu1g01403 1092 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 407 722 - -
Lapu1g01403 1092 Pfam Protein kinase domain 803 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 401 495 IPR032675 -
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 593 718 IPR032675 -
Lapu1g01403 1092 FunFam Leucine-rich repeat receptor protein kinase MSP1 765 880 - -
Lapu1g01403 1092 FunFam MDIS1-interacting receptor like kinase 2 isoform A 53 208 - -
Lapu1g01403 1092 ProSitePatterns Tyrosine protein kinases specific active-site signature. 926 938 IPR008266 GO:0004672|GO:0006468
Lapu1g01403 1092 Gene3D Ribonuclease Inhibitor 496 592 IPR032675 -
Lapu1g01403 1092 FunFam MDIS1-interacting receptor like kinase 2 881 1078 - -
Lapu1g01403 1092 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Lapu1g01403 1092 Pfam Leucine rich repeat 626 684 IPR001611 GO:0005515
Lapu1g01403 1092 Pfam Leucine rich repeat 240 299 IPR001611 GO:0005515
Lapu1g01403 1092 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Lapu1g01403 1092 SMART LRR_sd22_2 335 361 - -
Lapu1g01403 1092 SMART LRR_sd22_2 599 620 - -
Lapu1g01403 1092 SMART LRR_sd22_2 623 649 - -
Lapu1g01403 1092 SMART LRR_sd22_2 575 596 - -
Lapu1g01403 1092 SMART LRR_sd22_2 239 265 - -
Lapu1g01403 1092 SMART LRR_sd22_2 383 409 - -
Lapu1g01403 1092 Gene3D Transferase(Phosphotransferase) domain 1 881 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01403 Lapu-Chr1 26888089 26891949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01403 51 974 Receptor kinase-like Gene Family AT4G08850 44.231 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lapu1g01403 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01403 - - vra:106759489 1802.33