Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01391 ATGAGTTCAGCCACCACGGATTCTGACTTTGCATTCTTGGAATCTGTTCAACAATACCTACTTGGACATGATTCCATCAACCTCATGCCTGCAACTGCAACCCACCAAATTGCTTCTCACGATTCACTTTCAAACCCTAAATGTGATGGTGATTTCGAGAACATTGTTTTCCGCAGTGAGGATGCAACTGCTGTGGTGGCGCGTCATGTCCACGCACCACAGACATGGAAGCATTACCGAGGGGTTAGACGTAGGCCATGGGGGAAGTTTGCGGCGGAGATAAGGGATCCAAAGAAGAACGGAGCTAGGGTTTGGCTTGGAACTTATGAGACTGAAGAGAAAGCAGCTTTGGCTTATGACAAAGCCGCTTTCAAGATGCGTGGTCAAAAAGCTAAGTTGAATTTTCCTCATCTTATTGATTCTGATAATTTTGATATATTGTCAGAAGCGGTGATAGAGACAACTTCTAAGAGGAAGTTGTCAGAAAGGTTTCAACCATCGTCACCATCATCGTCGTGTTCAGATGATAGCTCAGAGTCACAAGGGACAAAGAGGAGGAAGAACCTCAGTGATCTATTGAATAAGTTAGCCAAGAATAGAAGCCAAGCCAAGGTGACATTCTGCATATTTGGAACAAATTCAGCACTATCTCCTTCACAGTGA 663 0.4434 MSSATTDSDFAFLESVQQYLLGHDSINLMPATATHQIASHDSLSNPKCDGDFENIVFRSEDATAVVARHVHAPQTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETEEKAALAYDKAAFKMRGQKAKLNFPHLIDSDNFDILSEAVIETTSKRKLSERFQPSSPSSSCSDDSSESQGTKRRKNLSDLLNKLAKNRSQAKVTFCIFGTNSALSPSQ* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01391 220 MobiDBLite consensus disorder prediction 161 178 - -
Lapu1g01391 220 SUPERFAMILY DNA-binding domain 78 137 IPR016177 GO:0003677
Lapu1g01391 220 ProSiteProfiles AP2/ERF domain profile. 78 136 IPR001471 GO:0003700|GO:0006355
Lapu1g01391 220 PANTHER DNA-BINDING DOMAIN 68 188 IPR044808 GO:0003700|GO:0009873
Lapu1g01391 220 CDD AP2 77 138 IPR001471 GO:0003700|GO:0006355
Lapu1g01391 220 MobiDBLite consensus disorder prediction 159 189 - -
Lapu1g01391 220 FunFam Ethylene-responsive transcription factor 2 77 137 - -
Lapu1g01391 220 PRINTS Ethylene responsive element binding protein signature 118 138 IPR001471 GO:0003700|GO:0006355
Lapu1g01391 220 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Lapu1g01391 220 SMART rav1_2 78 142 IPR001471 GO:0003700|GO:0006355
Lapu1g01391 220 Gene3D AP2/ERF domain 77 137 IPR036955 GO:0003700|GO:0006355
Lapu1g01391 220 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01391 Lapu-Chr1 26691638 26698386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01391 64 145 AP2-EREBP Transcription Factor Family AT2G44840 73.494 8.90e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g01391 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01391 K09286 - gmx:548037 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00799 10 9764410 9764983 Lapu1g01391 1 26691638 26698386 PCT