Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01384 ATGAATCGTAGAGTGAGGAGGAAGGTGGCGAGGAAAAGCAAAGGGAATGTGGTGCAATCTAGTTTCCCTGAAGTTCAAGATGAGGTTTTGCATTTGGAACCCCAAGGAGTTGTTGATTGGAACTGCTTGCCTGATGACACAGTAATTCAGCTGTTGTCGTGTCTGAGTTACCGAGATCGAGCTAGCTTGTCGTCAACTTGTAAGACATGGAGGTCTCTTGGTAGCTCCCCGTGTTTGTGGACTTCTCTGGATCTTCGTTCACACAGGTTTGATGCTGGCATGGCTTCATCACTTGCTCCCAGGTGTGTGCATCTACAGAAGCTCAGGTTTCGGGGGGCGGAGTCTGCTGATGCCATAATTCATCTTCGAGCTAAGAACTTGCGTGAATTGAGCGGTGACTATTGCAGGAAGATTACTGATGCAACTCTTTCAGTGATTGTGGCTCGGCATGAGTCACTTGAGAGCCTTCAGCTTGGACCAGATTTTTGTGAGAGAATAAGTAGTGATGCTATTAAAGCAATAGCTCATTGCTGTACTAACTTGAATAAGCTTAGACTCTCGGGTATCAGGGATGTAAATGCTGATGCTATTAATGCTTTGGCTAAGCATTGTCAAAAGTTGACTGATATTGGGTTCATTGACTGTCTGAATGTTGACGAGGTTGCACTGGGAAATGTGTTATCAGTTCGGTTCCTTTCTGTTGCGGGGACGTCAAGTATAAAGTGGGGTGTGGTTTCCCATCTTTGGCATAAACTTCCTAACCTGATTGGGTTAGATGTTTCAAGAACTGATATTGGCCCATCTGCTGTTTTCAGAATGTTATCCTTATCACAGAATTTGAGGGTTTTGATTGCTCTGAATTGTCCCATCCTTGAAGAAGACACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTATTAGTTTCCCTTCGTACTGATATTTTTAAAGGACTGGCTTCTTTATTTTTTGATAATACAAAGAGAGGAAAGAATGTGTTTTTGGACTGGAGGACCTCAAATAATAATGATAAGGACCTCAATGAAATTATACCGTGGCTTGAGTGGATGCTATCCCACACACTTTTGCGTTCTGCTGAGAGTCCTCAGCAGGGTCTTGATAATTTCTGGGTTGAACAAGGTGGGGCGCTTTTGCTAAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAAGAGAGGGCGGCTACAGGACTTGCAACTTTTGTTGTAATTGATGACGAAAATGCTAGCATAGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGAGGAATACGCCTCCTACTTGGTCTGGCAAAATCTTGGAGGGAAGGGCTTCAATCTGAGGCAGCTAAGGCCATTGCAAATTTGTCGGTCAATGCTAATGTGGCCAAAGCTGTCGCAGAAGAGGGTGGGATTGAGATTCTTGCTGGTTTGGCTAGGTCTATGAACAAACTGGTGGCTGAAGAGGCTGCTGGAGGATTATGGAATCTCTCTGTTGGAGAAGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAATACAAGCTTTAGTGGATCTTATATTCAAGTGGTCCTCTAGTGGAGATGGAGTTTTAGAACGGGCAGCTGGTGCATTGGCTAATTTGGCAGCGGATGACAAGTGTAGTACAGAGGTTGCACTGGCAGGAGGTGTACATGCTCTGGTGATGCTTGCACGTAAGTGCAAATTTGAGGGAGTGCAAGAGCAGGCTGCTCGTGCATTGGCTAACTTAGCTGCTCATGGAGATAGTAACAGTAACAATGCTGCAGTTGGACAAGAAGCAGGTGCTCTTGAGGCTCTTGTTCAACTTACTCGTTCTCCTCACGAGGGGATTAGGCAAGAGGCTGCTGGTGCACTTTGGAATTTGTCATTTGACGATAGAAATCGAGAAGCCATTGCCTCATCTGGTGGAGTTCAGGCCTTGGTTGCCCTTGCCCAAGCTTGTGCTAATGCCTCCCCTGGACTTCAAGAGAGAGCTGCTGGAGCTCTGTGGGGATTGTCAGTCTCGGAAACTAATAGTGTTGCCATTGGACGAGAAGGAGGTGTTGCACCTCTGATTGCACTTGCACGGTCTGAAGCAGAGGATGTTCATGAAACTGCTGCAGGGGCACTATGGAATCTTGCTTTCAATGCAAGTAATGCTTTACGAATAGTAGAGGAAGGTGGAGTATCTGCACTCGTTGATCTCTGTTCTTCATCAGTATCAAAAATGGCGCGCTTCATGGCTGCATTGGCATTGGCTTACATGTTTGACGGGAGAATGGATGAATATGCTTTAGTAGGCTCTCCATCTGAAAGTACTTCTAAGAGTGTGAGCTTGGATGGAGCAAGAAGAATGGCTTTGAAACACATTGAAGCTTTTGTTCTTATGTTCTCTGATCCACAAGCATTTGCAGCGGCTGCTGCATCATCTGCCCCTGCAGCATTAGCACAGGTTACTGAAGGTGCACGTATTCAAGAAGCAGGACATCTGAGATGCAGTGGTGCTGAAATTGGAAGATTCATCACTATGCTACGAAATCCATCATCTATACTCAAGGCTTGTGCAGCATTTGCTCTTCTCCAGTTTACAATTCCTGGGGGACGACATGCCATGCACCATGCTAGCCTCATGCAGAACTTGGGGGCACCAAGAGTTCTGCGTGGTGCGGCTGCAGCAGCAACTGCCCCACTTGAAGCAAAAATCTTTGCCCGAATTGTTCTCCGGAATCTTGAGTATCACCAGATAGAGCATACAGCTGCAACAGATAGGCACATTGACATAAATTTCATCGCCTTGATGTGTTTTTTTCTTTGTATTATTCCTAACTATTCTGTATAA 2835 0.4547 MNRRVRRKVARKSKGNVVQSSFPEVQDEVLHLEPQGVVDWNCLPDDTVIQLLSCLSYRDRASLSSTCKTWRSLGSSPCLWTSLDLRSHRFDAGMASSLAPRCVHLQKLRFRGAESADAIIHLRAKNLRELSGDYCRKITDATLSVIVARHESLESLQLGPDFCERISSDAIKAIAHCCTNLNKLRLSGIRDVNADAINALAKHCQKLTDIGFIDCLNVDEVALGNVLSVRFLSVAGTSSIKWGVVSHLWHKLPNLIGLDVSRTDIGPSAVFRMLSLSQNLRVLIALNCPILEEDTSFSASKYKNKLLVSLRTDIFKGLASLFFDNTKRGKNVFLDWRTSNNNDKDLNEIIPWLEWMLSHTLLRSAESPQQGLDNFWVEQGGALLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSWREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILAGLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGIQALVDLIFKWSSSGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARKCKFEGVQEQAARALANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGIRQEAAGALWNLSFDDRNREAIASSGGVQALVALAQACANASPGLQERAAGALWGLSVSETNSVAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNASNALRIVEEGGVSALVDLCSSSVSKMARFMAALALAYMFDGRMDEYALVGSPSESTSKSVSLDGARRMALKHIEAFVLMFSDPQAFAAAAASSAPAALAQVTEGARIQEAGHLRCSGAEIGRFITMLRNPSSILKACAAFALLQFTIPGGRHAMHHASLMQNLGAPRVLRGAAAAATAPLEAKIFARIVLRNLEYHQIEHTAATDRHIDINFIALMCFFLCIIPNYSV* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01384 944 Gene3D Ribonuclease Inhibitor 33 314 IPR032675 -
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 641 686 IPR000225 GO:0005515
Lapu1g01384 944 SUPERFAMILY RNI-like 39 293 - -
Lapu1g01384 944 Gene3D - 375 524 IPR011989 -
Lapu1g01384 944 Gene3D - 525 590 IPR011989 -
Lapu1g01384 944 FunFam Protein ARABIDILLO 2 355 502 - -
Lapu1g01384 944 SUPERFAMILY ARM repeat 365 744 IPR016024 -
Lapu1g01384 944 SMART fbox_2 43 83 IPR001810 GO:0005515
Lapu1g01384 944 Gene3D - 591 678 IPR011989 -
Lapu1g01384 944 Gene3D - 679 769 IPR011989 -
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 555 IPR000225 GO:0005515
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 685 727 IPR000225 GO:0005515
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 428 470 IPR000225 GO:0005515
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Lapu1g01384 944 SMART LRR_CC_2 204 229 IPR006553 -
Lapu1g01384 944 SMART LRR_CC_2 124 149 IPR006553 -
Lapu1g01384 944 SMART LRR_CC_2 150 177 IPR006553 -
Lapu1g01384 944 SMART LRR_CC_2 178 203 IPR006553 -
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 630 672 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 553 584 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 422 456 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 592 628 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 463 497 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 677 713 IPR000225 GO:0005515
Lapu1g01384 944 Pfam Armadillo/beta-catenin-like repeat 500 542 IPR000225 GO:0005515
Lapu1g01384 944 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Lapu1g01384 944 Pfam F-box-like 40 86 IPR001810 GO:0005515
Lapu1g01384 944 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 600 642 IPR000225 GO:0005515
Lapu1g01384 944 ProSiteProfiles F-box domain profile. 37 83 IPR001810 GO:0005515
Lapu1g01384 944 SMART arm_5 458 498 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 715 756 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 417 457 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 589 629 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 630 673 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 499 542 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 543 584 IPR000225 GO:0005515
Lapu1g01384 944 SMART arm_5 674 714 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01384 571 758 U-box Gene Family AT2G23140 34.921 1.19e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01384 - - gmx:100819086 1635.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01384 1 26642746 26660647 Lapu1g01384 1 26642746 26660647 ECH