Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01380 ATGGCTGAAAAAGATGAGGGGGTTGAGTTGAGTTTGAGTTTGAGTTTGGGAGTGAATAATCAACAACCTTTGAAGGTTAATCACATGCACCAGCCTCAACAACAACACCAACCACCTCAACCTGTTCCCATAAATCACAACAAAACTCTCTTTGCTGATTTGTTTCAGTTACCAGATCGGAGCTCCGATGTGATACGAGGAATCGACGTGAAATCGACGGCGGACTGCGAGGAAGACAACGGCGTTTCCTCGCCGAACAGCGCCGTGTCGAGCGTGAGCGGCGGCAAGCGGAGCGAGAGGGACGACGATAATGCTGCCTTGGTGGCCGGAGAGAGGACGTCGTGCTCGCGGGGGAGCGATGACGAAGATGGTGGCGGCGGAGACGGCGACGGCGGGAGGAAGAAACTGAGGCTGACGAAAGAGCAGTCCATGGTGTTGGAAGGAACGTTCAAGGAGCATAACACACTCAATCCGAAACGAAAGCAAGCTTTGGCACAGGAGTTGAATCTGAAGCCTAGACAAGTAGAGGTGTGGTTTCAGAACAGAAGGGCAAGAACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTGAAGAGATATAGTGAGAATTTAGCTGAAGAGAATAGAAGGTTGCAAAAGGAGGTCCAAGAGCTTAGGGCATTGAAATCATCCCCACAAATGTACATGCACATGAATCCTCCCACCACTCTTACAATGTGCCCCTCCTGTGAGCGTGCTCACTCGTCTTCGTCCTCCTCTCCTGCCACGGTCCACTCGGCGGCGGTGCCGAGTGCTCGCAAACTGTTTGGTGCAAACATCCGGCGGCCGGTGGCGGTCAACACTTGGCCGTTTGATGGCTCAATTCCTCGGCCATAA 879 0.521 MAEKDEGVELSLSLSLGVNNQQPLKVNHMHQPQQQHQPPQPVPINHNKTLFADLFQLPDRSSDVIRGIDVKSTADCEEDNGVSSPNSAVSSVSGGKRSERDDDNAALVAGERTSCSRGSDDEDGGGGDGDGGRKKLRLTKEQSMVLEGTFKEHNTLNPKRKQALAQELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRYSENLAEENRRLQKEVQELRALKSSPQMYMHMNPPTTLTMCPSCERAHSSSSSSPATVHSAAVPSARKLFGANIRRPVAVNTWPFDGSIPRP* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01380 292 SMART halz 189 232 IPR003106 GO:0006355|GO:0043565
Lapu1g01380 292 MobiDBLite consensus disorder prediction 19 44 - -
Lapu1g01380 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 259 - -
Lapu1g01380 292 SUPERFAMILY Homeodomain-like 118 190 IPR009057 -
Lapu1g01380 292 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634
Lapu1g01380 292 Coils Coil 195 225 - -
Lapu1g01380 292 MobiDBLite consensus disorder prediction 19 46 - -
Lapu1g01380 292 MobiDBLite consensus disorder prediction 115 135 - -
Lapu1g01380 292 CDD homeodomain 133 190 IPR001356 GO:0003677
Lapu1g01380 292 ProSitePatterns 'Homeobox' domain signature. 164 187 IPR017970 GO:0000981|GO:0006355
Lapu1g01380 292 FunFam Homeobox-leucine zipper protein 18 118 194 - -
Lapu1g01380 292 Pfam Homeodomain 133 187 IPR001356 GO:0003677
Lapu1g01380 292 Pfam Homeobox associated leucine zipper 189 223 IPR003106 GO:0006355|GO:0043565
Lapu1g01380 292 SMART HOX_1 131 193 IPR001356 GO:0003677
Lapu1g01380 292 MobiDBLite consensus disorder prediction 77 94 - -
Lapu1g01380 292 ProSiteProfiles 'Homeobox' domain profile. 129 189 IPR001356 GO:0003677
Lapu1g01380 292 MobiDBLite consensus disorder prediction 75 135 - -
Lapu1g01380 292 Gene3D - 137 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01380 Lapu-Chr1 26612040 26614969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01380 26 246 Homeobox Transcription Factor Family AT3G60390 58.776 7.93e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu1g01380 HD-ZIP_N 9.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01380 K09338 - gmx:100819624 400.593