Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01372 ATGGGGTTTGGGAATAATGCAATTCAGGCAGGGAGTTTGGATGTGGGGAAGTCGAAGGTAAAGATGCAAAAGGCTGGTGCAGAAAAGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGTATACCTTCAAGATCAAAGGTTGATACTTCCATCAGTGGCACTAGTGCTAACAGTGCAGTGGAAAAAACATCTGCATATGAGAAAAACAAGAAGGAACCAAATGCCCTTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACCCCAAAATTCAGTGAGGAGTTGAAGGTCTCTTCTCGTTTGAGAAAATTTACATTCAATGAGCTTAAGTTGGCCACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGATGCGTTTTCAAGGGTTGGATTGAAGAAAATGGTACAGCACCTGTGAAACCTGGTACTGGGCTTACTGTAGCAGTGAAAACTCTCAACCATGATGGGCTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTTGGTGACCTCGTTCATCCCAATCTGGTCAAATTGGTTGGTTTCTGTATTGAAGATGACCAAAGATTGTTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCACAAGGTCTTTCTTTTCTCCATGAAGAAGCACAGCGGCCTGTAATTTATCGTGATTTTAAGACATCTAATATTCTGTTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTCGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGGGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTAGAAATGCTCACTGGCCGGCGATCTATCGATAAGAATAGACCAAACGGGGAACACAATCTTGTGGAGTGGGCAAGGCCTGTACTTGGTGACCGGAGGATGTTACTAAGGATTATTGATCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGTGCACAGAAGGCTGCCCAGCTGGCTGCTCAATGCCTTTGCCGTGATCCAAAATCCAGACCAATGATGAGTGATGTTGTTCAAGTTCTGAAGCATTTGCAAAATCTCAAGGATATGGCTATCTCAACTTATCATTTCCAGGTTGCGAGAGTAGATCGAACCATGTCCATGCCTACTTCTAAAAATGGTGTGCAAGCACAGTTAACAACTTTATCAAGGAAGGGTCAACCTGCAAGGTCCTTGTCAAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCAATATATAAAGTCACCAAAACCTAATGGATAA 1434 0.4351 MGFGNNAIQAGSLDVGKSKVKMQKAGAEKEIGCCVKFCFIGSCIPSRSKVDTSISGTSANSAVEKTSAYEKNKKEPNALPGSSTTTSNAESIPSTPKFSEELKVSSRLRKFTFNELKLATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHPNLVKLVGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAQGLSFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLCRDPKSRPMMSDVVQVLKHLQNLKDMAISTYHFQVARVDRTMSMPTSKNGVQAQLTTLSRKGQPARSLSSPKGPHGSPYHQYIKSPKPNG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01372 477 MobiDBLite consensus disorder prediction 442 477 - -
Lapu1g01372 477 MobiDBLite consensus disorder prediction 49 96 - -
Lapu1g01372 477 Gene3D Phosphorylase Kinase; domain 1 103 208 - -
Lapu1g01372 477 MobiDBLite consensus disorder prediction 49 66 - -
Lapu1g01372 477 ProSitePatterns Protein kinases ATP-binding region signature. 129 161 IPR017441 GO:0005524
Lapu1g01372 477 Pfam Protein kinase domain 126 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01372 477 CDD STKc_IRAK 129 407 - -
Lapu1g01372 477 FunFam Serine/threonine-protein kinase BIK1 90 208 - -
Lapu1g01372 477 ProSiteProfiles Protein kinase domain profile. 123 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01372 477 MobiDBLite consensus disorder prediction 77 96 - -
Lapu1g01372 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Lapu1g01372 477 SUPERFAMILY Protein kinase-like (PK-like) 97 405 IPR011009 -
Lapu1g01372 477 FunFam Probable serine/threonine-protein kinase PBL8 209 424 - -
Lapu1g01372 477 Gene3D Transferase(Phosphotransferase) domain 1 209 427 - -
Lapu1g01372 477 PANTHER OS01G0588500 PROTEIN-RELATED 82 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01372 Lapu-Chr1 26496978 26501443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01372 81 420 Glycoside Hydrolase AT3G07070 51.705 4.63e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu1g01372 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01372 - - vum:124829441 898.656