Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01369 ATGGCAGGAAGTTCAAGCAAGGTTGCCTTTATCTTGGTCACTTTTGCCATTACTATTCCATGCCTTGAGGCTGGCATTGGTGAGTTTGACGAGTTTCTCAAAGGACAAGCTCTTCAGGCCCAAGAAATCGCTCTTGAATCCTACGTGCCAGACCCTGTAAACATTACATCCGAACTCAATATACATGTCCACGAGGCTTTGGGGGAGGCGTTAAAGGAGGAATCAAACCACACCAGGAGGGAACTGAAGCAGAAATACCAAGGACCATGCTTGGCTACAAACCCAATCGATCGCTGTTGGAGGTGTAGGAAAAACTGGGCCAAAAACCGTTTTAAGTTAGCCAGCTGCGCGAAGGGTTTTGGAAGAAGGGCCGTGGGAGGTCTCGGAGGCAAAATCTACGTGGTCACTGATCCCTCTGACGATGATCCCATTAACCCTAAACCCGGAACCCTACGGTTCGGTGTTCTCCAAAAGGAGCCACTGTGGATCACATTTGCAGGAAGCATGATCATCAAGTTGAATTACGAGTTGCTGATTGCTTCTGACAAAACCATCGACGGTCGTGGAGCGAATGTGGTGATCAAGGATGGTTCAGGCCTTACCATGCAATTTGTGAACAACGTTATTATCCATGGGGTTCGCATACAAAAGATCAAGTCCACGCACGGTGGCATGATCAGGGACTCTTGGGACCACGTGGGAATAAGAACCAGGGCTGATGGGGATGCCATCTCCATATTTGGCTCTTCAAACATTTGGATCGATCATATCTCACTCTCTGATTGCGAGGATGGTCTCATCGACATTATCCAGGGTTCCACTGGAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGTTATTCGGAGCCAGCGACACCTACACCGGGGACAAGATAATGCAGGTGACAGTGGCATTCAACCATTTCGGGCAGGGTCTGATCCAGAGAATGCCCCGATGCAGATGGGGTTTCTTCCACGTGTTGAACAACGATTACACTCACTGGCTGATGTATGCAATTGGTGGCAGCTCAGCGCCAACGATTCTGAGCCAAGGAAACCGCTTCATTGCACCAAACAACGACGCTGCCAAGGAAGTCACGCACAGGGACTATGCAGATCCTTCTGTGTGGGAAAAATGGCAATGGAGATCTGAGAACGATGTCTTCATGAATGGGGCTACCTTTCATCAGTCAGGGTCACCTCTTGGAAAGCTTCCATTCCACAAAGGGTTCCTCATGAAACCTAGACATGGGTCACAAGCCAACAGGCTCACACGCTTTTCTGGAGCCCTCAATTGCAAGGTGGGAAGTCTTTGCTAG 1332 0.4902 MAGSSSKVAFILVTFAITIPCLEAGIGEFDEFLKGQALQAQEIALESYVPDPVNITSELNIHVHEALGEALKEESNHTRRELKQKYQGPCLATNPIDRCWRCRKNWAKNRFKLASCAKGFGRRAVGGLGGKIYVVTDPSDDDPINPKPGTLRFGVLQKEPLWITFAGSMIIKLNYELLIASDKTIDGRGANVVIKDGSGLTMQFVNNVIIHGVRIQKIKSTHGGMIRDSWDHVGIRTRADGDAISIFGSSNIWIDHISLSDCEDGLIDIIQGSTGITISNCHMTKHNDVMLFGASDTYTGDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSAPTILSQGNRFIAPNNDAAKEVTHRDYADPSVWEKWQWRSENDVFMNGATFHQSGSPLGKLPFHKGFLMKPRHGSQANRLTRFSGALNCKVGSLC* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01369 443 Pfam Pectate lyase, N terminus 26 82 IPR007524 GO:0030570
Lapu1g01369 443 PANTHER PECTATE LYASE 18-RELATED 40 441 IPR045032 GO:0030570
Lapu1g01369 443 Pfam Pectate lyase 178 359 IPR002022 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Lapu1g01369 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Lapu1g01369 443 Gene3D - 93 436 IPR012334 -
Lapu1g01369 443 SMART amb_all 168 365 IPR002022 -
Lapu1g01369 443 SUPERFAMILY Pectin lyase-like 94 434 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01369 Lapu-Chr1 26465789 26467398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01369 7 443 Polysaccharide Lyase AT5G15110 54.274 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01369 K01728 - gmx:100780236 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01369 1 26465789 26467398 Lapu1g01369 1 26465789 26467398 ECH
Lapu1g01369 1 26465789 26467398 Lapu9g00661 9 7861614 7863457 ECH