Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01363 ATGGGTGAAGTGAAGGAAGAAAATGAGAGATTGAAGAAGACGCTGGAAAGAGTAGAAAAGGATTACCACTCTCTTCAACTTCGTTTCTTTGACATTCTTCACAAAGATGTTTCAAAGGGTGTGGTTGATTCATCTACTTCCCATGATCATCAAGGTGAAGAGCCTGAGTTTGTGTCACTTTGCCTTGGAAGAAGTCCAACGGAGCCTAAGAAGGAGGCAAGAATTGGAGATTCCAACAAACCAACAGAAAAAGATGTTGGACCCAACCTTACTCTTGGATTAGACTCCAAGCACTTGTTGGCCATGGAGTTTGTGTCTGATTTGAGTCCCATGAACAGCTCAGAAGAACCAAAGGAAACGGAAGCAGAAGGAACATTGTCAACAAATCAATCAGCAAAAGTGATAAATGTAAATGAAGACATTTCAGATTATATGCCAGCCAAGAGAGCAAGGGTATCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGGTGTCAATGGAGGAAATATGGACAGAAGATAGCAAAGGGAAACCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTTAGGAAGCAGGTGCAAAGATGTTCTGAGGACCTGTCCATCTTAATCACAACCTATGAAGGAACCCATAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCAACAACTTCTGCTGCAGCTTCCATGCTATTGTCAGGTTCTTCAACATCAAACCTTTCAAGCCACATTTCTGCATCTTTTGGAAATGCTCCTACCACACTACTCAATGGTCTAAGTTTCAGTGACCAGTTTCATGAATCAAGAGCCAAACAAATCTTCTCACCACCAAACCATGCCTCACCACATATGTTCTCAACAATCACTCTAGACCTGACTTCTTCAGCTCCTTCCTCCTCATCAACTCAATTCCACCATGGCCTACCTTCAACCATGGCTTCAATTTCTAACCCAAGATTTTCAGCTAGTCTCAACTTTTGTTCCCCGGAGCATAACTTCACACCATCCATTTGGGGTAAGGGGCTCCATGATAATGGCACAACCACAACACCAATGGACAAAGTCCCCACAAGGCCAATTACGCAGCCAAATAATTTCCAACAACATTTATACCAACAATGCACAACAAACCAAACTCCCTCGAGAGAAGCTTTGGCAGAAACAATAACCAATGCAATCAGCACAGACCCGAGTTTTCGTTCAGTAATAGCTGCTGCAGTTTCATCGATAGTGGAACATGGATCAAACAGTGGTAAACAAGAGGTATCAGAGAATATTCTTGGTTCAGGGTTGAAATTAAAACTTGGGGAGCATCTTAAATTGGCTTCACCCAGTCCCTTGAACCAGAATGGGAAAGGATGCCTAACAGGCTACCTCAAAAGTTTGTCCTCTACAAGTTCCGAGGCTGGAAACTTCATTCTTCTCCAACCACAACTGCCACTTTCTTTCTCCAGGAGTGTCACAAATCAGATCAACCGCTATGTTCCAGAAATGAACACGCAACACTAG 1539 0.436 MGEVKEENERLKKTLERVEKDYHSLQLRFFDILHKDVSKGVVDSSTSHDHQGEEPEFVSLCLGRSPTEPKKEARIGDSNKPTEKDVGPNLTLGLDSKHLLAMEFVSDLSPMNSSEEPKETEAEGTLSTNQSAKVINVNEDISDYMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCSEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSNLSSHISASFGNAPTTLLNGLSFSDQFHESRAKQIFSPPNHASPHMFSTITLDLTSSAPSSSSTQFHHGLPSTMASISNPRFSASLNFCSPEHNFTPSIWGKGLHDNGTTTTPMDKVPTRPITQPNNFQQHLYQQCTTNQTPSREALAETITNAISTDPSFRSVIAAAVSSIVEHGSNSGKQEVSENILGSGLKLKLGEHLKLASPSPLNQNGKGCLTGYLKSLSSTSSEAGNFILLQPQLPLSFSRSVTNQINRYVPEMNTQH* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01363 512 Gene3D WRKY domain 148 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu1g01363 512 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 427 IPR044810 GO:0003700
Lapu1g01363 512 MobiDBLite consensus disorder prediction 43 90 - -
Lapu1g01363 512 MobiDBLite consensus disorder prediction 109 130 - -
Lapu1g01363 512 ProSiteProfiles WRKY domain profile. 158 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01363 512 MobiDBLite consensus disorder prediction 67 81 - -
Lapu1g01363 512 Coils Coil 1 28 - -
Lapu1g01363 512 FunFam probable WRKY transcription factor 31 148 225 - -
Lapu1g01363 512 Pfam WRKY DNA -binding domain 164 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01363 512 SMART WRKY_cls 163 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu1g01363 512 SUPERFAMILY WRKY DNA-binding domain 156 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01363 Lapu-Chr1 26421666 26423824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01363 1 472 WRKY Transcription Factor Family AT5G15130 42.292 2.61e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu1g01363 WRKY 4.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01363 - - gmx:100780402 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01363 1 26421666 26423824 Lapu1g01363 1 26421666 26423824 ECH
Lapu1g01363 1 26421666 26423824 Lapu9g00662 9 7879700 7882852 ECH
Lapu2g01473 2 27807772 27809723 Lapu1g01363 1 26421666 26423824 ECH