Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01355 ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACTCACGAAGAAGATCACGACCACCTTCCTTCAACCTCTCTCAACGCCTTCCCCTCTTTGCCACCCCAACACTTCCAAGGGGGTGCACCATCATTCCTGTTGAAGCGGTCCTTGTCGTTTTCAGGCATCGAGAACAAGTGCGATGAGGTGAATGGAGATGATGAATTATCAGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGACGAGTTTTGATATGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGATTCAGAATCAGAAACTACAGGCAGAGTTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTAATTTAGATCTCTCAAAAGCACCAACTTTGAACAATCCTATATCTTGTCAACCACACTTTCCCACCAGCATAACTCAGATCCTCCAATATTCGTCAAAATCAGACTTTCAAGATGATGGCTTCTGCGACATGTTTCACAACATTGATGCACAACAAAACTTTTGGCCCTGGCCCGGTCAACAGAACCACAATTTCCATTGA 807 0.4436 MAFPPSHSFTFHTHEEDHDHLPSTSLNAFPSLPPQHFQGGAPSFLLKRSLSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALETSFDMGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKIQNQKLQAELQAVKSRGWCEAGIISLKKETEGSWSNGSDNSSDINLDLSKAPTLNNPISCQPHFPTSITQILQYSSKSDFQDDGFCDMFHNIDAQQNFWPWPGQQNHNFH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01355 268 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Lapu1g01355 268 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Lapu1g01355 268 Gene3D - 77 141 - -
Lapu1g01355 268 FunFam Homeobox-leucine zipper protein ATHB-13 70 138 - -
Lapu1g01355 268 Coils Coil 126 174 - -
Lapu1g01355 268 SMART HOX_1 77 138 IPR001356 GO:0003677
Lapu1g01355 268 CDD homeodomain 79 135 IPR001356 GO:0003677
Lapu1g01355 268 MobiDBLite consensus disorder prediction 1 33 - -
Lapu1g01355 268 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Lapu1g01355 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 259 IPR045224 GO:0003700
Lapu1g01355 268 SUPERFAMILY Homeodomain-like 74 136 IPR009057 -
Lapu1g01355 268 PRINTS Lambda-repressor HTH signature 114 130 IPR000047 GO:0003677
Lapu1g01355 268 PRINTS Lambda-repressor HTH signature 105 114 IPR000047 GO:0003677
Lapu1g01355 268 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01355 Lapu-Chr1 26368782 26370796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01355 1 260 Homeobox Transcription Factor Family AT5G15150 47.387 3.70e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu1g01355 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01355 K09338 - gmx:100797920 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01355 1 26368782 26370796 Lapu1g01355 1 26368782 26370796 ECH
Lapu4g01378 4 30865345 30868563 Lapu1g01355 1 26368782 26370796 PCT