Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu1g01355 | ATGGCCTTTCCACCTTCTCACAGCTTCACGTTTCACACTCACGAAGAAGATCACGACCACCTTCCTTCAACCTCTCTCAACGCCTTCCCCTCTTTGCCACCCCAACACTTCCAAGGGGGTGCACCATCATTCCTGTTGAAGCGGTCCTTGTCGTTTTCAGGCATCGAGAACAAGTGCGATGAGGTGAATGGAGATGATGAATTATCAGACGATGGGAACTTTCAGTGTGGGGAGAAGAAAAAGAGGCTGAATTTGGAACAGGTGAAGGCTCTTGAGACGAGTTTTGATATGGGGAACAAGCTTGAGCCAGAAAGGAAAGTGCAGTTAGCTAAGGCTTTGGGGTTGCAGCCAAGACAAATTGCCATATGGTTTCAGAATAGAAGGGCTAGATGGAAAACCAAGCAATTGGAGAAGGAATATGAAGCACTCAAGAAGCAGTTTGAGGCAGCTAAGGCTGATAATGATGTTCTTAAGATTCAGAATCAGAAACTACAGGCAGAGTTACAAGCAGTAAAAAGTAGGGGTTGGTGTGAAGCTGGAATAATCAGCCTTAAGAAAGAAACTGAGGGTTCATGGAGCAATGGAAGTGATAACAGCTCAGACATTAATTTAGATCTCTCAAAAGCACCAACTTTGAACAATCCTATATCTTGTCAACCACACTTTCCCACCAGCATAACTCAGATCCTCCAATATTCGTCAAAATCAGACTTTCAAGATGATGGCTTCTGCGACATGTTTCACAACATTGATGCACAACAAAACTTTTGGCCCTGGCCCGGTCAACAGAACCACAATTTCCATTGA | 807 | 0.4436 | MAFPPSHSFTFHTHEEDHDHLPSTSLNAFPSLPPQHFQGGAPSFLLKRSLSFSGIENKCDEVNGDDELSDDGNFQCGEKKKRLNLEQVKALETSFDMGNKLEPERKVQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEALKKQFEAAKADNDVLKIQNQKLQAELQAVKSRGWCEAGIISLKKETEGSWSNGSDNSSDINLDLSKAPTLNNPISCQPHFPTSITQILQYSSKSDFQDDGFCDMFHNIDAQQNFWPWPGQQNHNFH* | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu1g01355 | 268 | ProSitePatterns | 'Homeobox' domain signature. | 109 | 132 | IPR017970 | GO:0000981|GO:0006355 | |
Lapu1g01355 | 268 | Pfam | Homeodomain | 79 | 132 | IPR001356 | GO:0003677 | |
Lapu1g01355 | 268 | Gene3D | - | 77 | 141 | - | - | |
Lapu1g01355 | 268 | FunFam | Homeobox-leucine zipper protein ATHB-13 | 70 | 138 | - | - | |
Lapu1g01355 | 268 | Coils | Coil | 126 | 174 | - | - | |
Lapu1g01355 | 268 | SMART | HOX_1 | 77 | 138 | IPR001356 | GO:0003677 | |
Lapu1g01355 | 268 | CDD | homeodomain | 79 | 135 | IPR001356 | GO:0003677 | |
Lapu1g01355 | 268 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Lapu1g01355 | 268 | Pfam | Homeobox associated leucine zipper | 134 | 173 | IPR003106 | GO:0006355|GO:0043565 | |
Lapu1g01355 | 268 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 49 | 259 | IPR045224 | GO:0003700 | |
Lapu1g01355 | 268 | SUPERFAMILY | Homeodomain-like | 74 | 136 | IPR009057 | - | |
Lapu1g01355 | 268 | PRINTS | Lambda-repressor HTH signature | 114 | 130 | IPR000047 | GO:0003677 | |
Lapu1g01355 | 268 | PRINTS | Lambda-repressor HTH signature | 105 | 114 | IPR000047 | GO:0003677 | |
Lapu1g01355 | 268 | ProSiteProfiles | 'Homeobox' domain profile. | 74 | 134 | IPR001356 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu1g01355 | Lapu-Chr1 | 26368782 | 26370796 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu1g01355 | 1 | 260 | Homeobox Transcription Factor Family | AT5G15150 | 47.387 | 3.70e-76 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Lapu1g01355 | Homeodomain | 1.5e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu1g01355 | K09338 | - | gmx:100797920 | 412.149 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu1g01355 | 1 | 26368782 | 26370796 | Lapu1g01355 | 1 | 26368782 | 26370796 | ECH | |
Lapu4g01378 | 4 | 30865345 | 30868563 | Lapu1g01355 | 1 | 26368782 | 26370796 | PCT |