Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01349 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGGGTCAAGAAAGGGCCATGGACTCCTGAAGAAGACATCATATTGGTTTCTTATATACAGGAACATGGTCCTGGCAATTGGAGGGCAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGCTGTAGACTTAGATGGACAAATTACTTGAGGCCAGGAATCAAACGTGGTAACTTCACAGAACAAGAGGAGAAGATGATAATCCACCTTCAAGATCTTCTAGGAAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACAGATAATGACATAAAGAACTATTGGAACACCCATTTGAGAAAGAAGCTGAAGAAGTTGCAAACAGGTTGTGAAGGTAGCTTGGGAGAAGGGTTTTCAGCCTCAAGGCAAATTCCTAGAGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCCCCAGAAAAGCCATCTTGTTTTTCTGTATCAAACTCATACCCTTCAGATAGTAGCAGCTCCTTCTCTTCCACCAAACCATCTCAATCTTTGTGCTATGCTTCGAGTGCTGAGAACATAGCTCGCATGTTGAAGGGTTGGATGAAAAACCCACCAAAGTCCTCAAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTCGCAGCAGGAGCTGATACTGCTTCTAGTGGAGCAAAGGAATTGTCTGAGAATTTGGAATACCTGTTTGAGTTTGATCAGTCTTTGGAGTCCTCAAACTCCGATCAGTTCTCTCAGTCCTTTTCTCCCGAGACCACTGTTTTGCAAGATGAAAGCAAGCCTGATATTGGTGCAGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGGTGATGCCAAGTTTTTCTAA 957 0.4389 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGCEGSLGEGFSASRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCFSVSNSYPSDSSSSFSSTKPSQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSGAKELSENLEYLFEFDQSLESSNSDQFSQSFSPETTVLQDESKPDIGAEIMPFSLLEKWLLDEAACQEKVGCGDAKFF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01349 318 CDD SANT 69 112 IPR001005 -
Lapu1g01349 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu1g01349 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu1g01349 318 CDD SANT 16 61 IPR001005 -
Lapu1g01349 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu1g01349 318 Gene3D - 13 66 - -
Lapu1g01349 318 SMART sant 66 114 IPR001005 -
Lapu1g01349 318 SMART sant 13 63 IPR001005 -
Lapu1g01349 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Lapu1g01349 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lapu1g01349 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu1g01349 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu1g01349 318 FunFam Transcription factor MYB30 68 126 - -
Lapu1g01349 318 FunFam MYB-related transcription factor 13 66 - -
Lapu1g01349 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lapu1g01349 318 Gene3D - 69 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01349 Lapu-Chr1 26270455 26272532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01349 1 315 MYB Transcription Factor Family AT5G62470 51.801 7.57e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01349 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01349 K09422 - gmx:778080 541.191