Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01348 ATGGACATAACCCCAACAACAACTATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCACCACCCCCACCCCCACAAAAACCTTGTCTTTCTCAAACGGGGTCCTCAAGCGCCACCACCATCACCACCACCACCACCCCATGTCCGCGGCCTTTACTTACAAAGAATGCCTCAAAAACCACGCCGCTAACTTGGGTGGCCACGCCTTAGATGGCTGCGGCGAGTTCATGCCGTCCCCCTCCGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCGGCCTGCGGCTGTCACCGCAACTTCCACCGCCGCGAGCCGGATGAGCCGCCCATCGCCTCCACCACGCATGTGATCGAATACCAGCCGCACCATCGCCACCACCCTCCGCCTCCGTTCCAGACGGCAGTAGCGGCGAATCGAAGCCCGAATTCCGCATCCCCACCGCCGATCTCCTCTTCGTACTACCCCTCCGCGCCGCACATGCTCCTAGCCCTCTCCGCCGGGCTCGCCGCGCCGCCGGAGAGCACCGCCGCACCATCCACCGCACTCACCAGAAAGCGCTTCAGGACCAAGTTCAGCCAGGAGCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCATAACAACAAAAACACTTTGGCCAAAAGAGATAACAATGTTAATATTACTAGCAATGATAATATTACTAATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGACCCTAACAGCAACATCGGCAGTGGTGCTGAAGATCGCGGTGAGGAGGATCCGAGTCGCAATCACTTTGGTGTTGGTGGGGTGAACGTTGGTGCTAACGGATCTTCTTCTACTCCTTGA 981 0.5474 MDITPTTTINNTTPSATTKSPEHDTETPTRITTPTPTKTLSFSNGVLKRHHHHHHHHPMSAAFTYKECLKNHAANLGGHALDGCGEFMPSPSATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQTAVAANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSTALTRKRFRTKFSQEQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEIGVDRSVLKVWMHNNKNTLAKRDNNVNITSNDNITNNINDNDANGGVKGFEDPNSNIGSGAEDRGEEDPSRNHFGVGGVNVGANGSSSTP* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01348 326 MobiDBLite consensus disorder prediction 1 42 - -
Lapu1g01348 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Lapu1g01348 326 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Lapu1g01348 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 255 - -
Lapu1g01348 326 Gene3D - 184 257 - -
Lapu1g01348 326 MobiDBLite consensus disorder prediction 273 326 - -
Lapu1g01348 326 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Lapu1g01348 326 SUPERFAMILY Homeodomain-like 188 257 IPR009057 -
Lapu1g01348 326 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 64 116 IPR006456 -
Lapu1g01348 326 FunFam Zinc-finger homeodomain protein 2 184 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01348 Lapu-Chr1 26242330 26243844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01348 1 252 ZF-HD Transcription Factor Family AT5G15210 53.968 1.17e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu1g01348 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01348 - - gmx:100786999 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01348 1 26242330 26243844 Lapu1g01348 1 26242330 26243844 ECH
Lapu4g01366 4 30616546 30618123 Lapu1g01348 1 26242330 26243844 PCT