Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01327 ATGATGCATTTATGTAGGGAAATGGCTCTTCTTGGATTTCTTCTGGGACTTTTCTACATGGTGTCACATGTCAAGGCTTACGGGGGTTGGACCAATGCACACGCCACTTTCTATGGAGGAGGTGATGCTTCTGGGACAATGGGTGGGGCCTGTGGTTATGGAAATCTGTATAGCCAGGGTTATGGAACTGATACAACGGCACTGAGCACTGCACTGTTCAACAATGGTTTGAGCTGTGGTGCATGCTTTGAAATTAAATGTGTGAATGACCCACAATGGTGCCTTCCTGGCTCCATCGTAGTCACTGCCACAAATTTCTGTCCACCTGGTGGCTGGTGTGACCCTCCCCAACACCACTTTGATCTGTCTCAACCTGTTTTCCAGCACATTGCCCAATATAAGGCTGGAATTGTTCCTGTAGTTTACAGAAGGGTGAGATGCAGGAGAAAGGGTGGAATCAGGTTCGCCATCAATGGCCACTCTTACTTCAATTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGTCCATCAAAGGGTCAAGAACTAGATGGCAGGCCATGTCAAGGAACTGGGGGCAAAACTGGCAAAGCAACTCCTATTTGAACGGCCAAAGTCTTTCCTTTGTAGTGACCACAAGCAATGGACACAGTGTGGTGTCATACAATGTTGCTCCAGCTGGTTGGTCCTTTGGGCAGACCTACACCGGAAGGCAGTTCAACTACTAA 741 0.4804 MMHLCREMALLGFLLGLFYMVSHVKAYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTDTTALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPQHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRKGGIRFAINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPAGWSFGQTYTGRQFNY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01327 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Lapu1g01327 246 Gene3D - 19 148 IPR036908 -
Lapu1g01327 246 CDD DPBB_EXPA_N 29 137 - -
Lapu1g01327 246 SMART dpbb_1 65 142 IPR007112 -
Lapu1g01327 246 Pfam Lytic transglycolase 65 142 IPR009009 -
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Lapu1g01327 246 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Lapu1g01327 246 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Lapu1g01327 246 SUPERFAMILY Barwin-like endoglucanases 29 170 IPR036908 -
Lapu1g01327 246 Gene3D - 152 244 IPR036749 -
Lapu1g01327 246 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
Lapu1g01327 246 FunFam Expansin 19 148 - -
Lapu1g01327 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 152 IPR007112 -
Lapu1g01327 246 FunFam Expansin 152 244 - -
Lapu1g01327 246 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 60 74 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Lapu1g01327 246 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Lapu1g01327 246 PANTHER EXPANSIN-A15 16 244 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01327 Lapu-Chr1 26029216 26031315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01327 7 244 Expansin Gene Family AT2G03090 77.419 4.96e-138 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01327 K20628 - gmx:100791784 481.1