Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01322 ATGGGACGATCACCATGCTGTGACAAGGTGGGTCTAAAGAAAGGACCATGGACGCCAGAGGAAGATCAGAAGCTCTTGGCATATATTGAAGAACATGGCCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCTGGACTTGAGAGGTGTGGCAAGAGCTGCAGATTGAGATGGACTAATTATCTAAGGCCTGATATTAAGAGGGGAAAGTTCAGTATGCAAGAAGAGCAAACCATCATTCAACTCCATGCACTCTTAGGGAACAGGTGGTCGGCAATAGCAACACATTTGCCAAAGAGAACAGATAATGAGATAAAAAACTACTGGAATACGCATCTGAAGAAAAGGTTAGACAAAATGGGAATTGATCCGGTGACTCACAAGCCCAGGAACGATGCTCTTTTCTCCACTGAGGGCCATTCCAAGAGTGCATCCAACCTAAGCCACATGGCTCAGTGGGAGAGTGCCAGACTCGAAGCAGAAGCAAGATTAGTCAGAGAATCAAAACTACGTACCTCACATTCATCATCACCCTCATTGCAGCATTCTCTAATTGGCACTTCTGCATCATCATCATCTTCTTCAGCTCCAGTACTACTCTCCTCAACACGTTCTCTTGATCATGCGTGGAACAATGGTACTAGTACTAGTACGGTTGCAACTAGGGTCACTGACCTTGAGTCCCCCACTTCTACCTTATCTGAGAACAATGCCCCACCAATTATGACCAGTGTGATTGAGTTTGTTGGTTCTTCGGAGAAAGGGATGGTGAAGGAAGAAGAAGAGCGAGAGTGGAACAAAGGTTTTCATGAAAGCTCCATCCATTTGGGAGAATACAAAGATGGCATGGAGAATTCAATGCCTTTCTCGTCTAGTCTGCATGAGTTGACAACGATCATGGCAACCACGTGGGGTTCTAGTACTACTAGTGCACATCTACATGGACATGTTTCTGAGGAGGGATTCACCAACCTTTTGCTGAATGCTAACTCCGATGACGGGAGTTTGTCGCCGGAGGGTGGCGGAGAGTCTAATAATAATAGTCATGGTAATGGTAGTGATGATGGTGGTAACGGTAACGAGTTATACGAAGATAACAAGATCTATTGGAACAACATTCTTAATTTGATGAACTGTTCTCCCCCTTCGGATTCACCAATGTTCTGA 1164 0.4527 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSMQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLDKMGIDPVTHKPRNDALFSTEGHSKSASNLSHMAQWESARLEAEARLVRESKLRTSHSSSPSLQHSLIGTSASSSSSSAPVLLSSTRSLDHAWNNGTSTSTVATRVTDLESPTSTLSENNAPPIMTSVIEFVGSSEKGMVKEEEEREWNKGFHESSIHLGEYKDGMENSMPFSSSLHELTTIMATTWGSSTTSAHLHGHVSEEGFTNLLLNANSDDGSLSPEGGGESNNNSHGNGSDDGGNGNELYEDNKIYWNNILNLMNCSPPSDSPMF* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01322 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu1g01322 387 FunFam MYB-related transcription factor 13 66 - -
Lapu1g01322 387 CDD SANT 69 112 IPR001005 -
Lapu1g01322 387 MobiDBLite consensus disorder prediction 326 354 - -
Lapu1g01322 387 MobiDBLite consensus disorder prediction 326 359 - -
Lapu1g01322 387 CDD SANT 16 61 IPR001005 -
Lapu1g01322 387 SMART sant 13 63 IPR001005 -
Lapu1g01322 387 SMART sant 66 114 IPR001005 -
Lapu1g01322 387 Gene3D - 13 66 - -
Lapu1g01322 387 MobiDBLite consensus disorder prediction 170 195 - -
Lapu1g01322 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu1g01322 387 MobiDBLite consensus disorder prediction 121 145 - -
Lapu1g01322 387 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Lapu1g01322 387 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu1g01322 387 MobiDBLite consensus disorder prediction 168 195 - -
Lapu1g01322 387 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu1g01322 387 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu1g01322 387 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lapu1g01322 387 Gene3D - 69 116 - -
Lapu1g01322 387 FunFam MYB transcription factor 69 116 - -
Lapu1g01322 387 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01322 Lapu-Chr1 25971840 25975157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01322 1 387 MYB Transcription Factor Family AT3G01140 50.120 2.84e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01322 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01322 K09422 - gmx:100794047 587.415