Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01320 ATGGAAGCACCATTATCAGGTGTGAGGAAAGGAGCATGGTGTCAAACTGAAGATGACCTTCTCAGAGACTGCGTGCAACTTTATGGCGAAGGAAAATGGCACCTTGTTCCTCAAAGAGCAGGGTTGAACAGATGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGAGACTTTAGTGAAGATGAGGTTGATTTGATGATCAGATTGCATAAACTTTTGGGAAACAGATGGTCTCTCATTGCAGGAAGACTTCCCGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACACTCTCACAACAAAGAAGATGACGACAACAACAACGTAAAAGAATCCGAAACAACTTTGACACCCCACCAAGTGATAAAGCCTGTGCCTCGAACTTTGCCAAAAGCATCGCCCTTGCTGCAAGGAAAATTGATCAGTAGTTCCAAGGTTGGTGGTAGTGAAGCAGTTTCATCAGGGTCTGAGATTTGGTGGGAAACTTTGTTGGATGAGAAGGAAGAGAACATTGCAGTTAACAACAACACGTGCTTCTCTGGTGAGAAAGATGGAACGTTTGAGCTTTGGGATGAAGAACTTAGTTCAATTGCTTCTGACTTTCTTACAGAAGGTGAAACATGGAGCGACTTTCTTCTTAATTAA 693 0.4271 MEAPLSGVRKGAWCQTEDDLLRDCVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLMIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTNMRRKVHSHNKEDDDNNNVKESETTLTPHQVIKPVPRTLPKASPLLQGKLISSSKVGGSEAVSSGSEIWWETLLDEKEENIAVNNNTCFSGEKDGTFELWDEELSSIASDFLTEGETWSDFLLN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01320 230 Gene3D - 3 63 - -
Lapu1g01320 230 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lapu1g01320 230 CDD SANT 12 57 IPR001005 -
Lapu1g01320 230 CDD SANT 66 108 IPR001005 -
Lapu1g01320 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 131 - -
Lapu1g01320 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Lapu1g01320 230 FunFam Myb transcription factor 10 62 - -
Lapu1g01320 230 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Lapu1g01320 230 Pfam Myb-like DNA-binding domain 63 106 IPR001005 -
Lapu1g01320 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Lapu1g01320 230 SMART sant 62 110 IPR001005 -
Lapu1g01320 230 SMART sant 9 59 IPR001005 -
Lapu1g01320 230 Gene3D - 64 134 - -
Lapu1g01320 230 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Lapu1g01320 230 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
Lapu1g01320 230 FunFam Transcription factor MYB113 65 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01320 Lapu-Chr1 25949493 25950533 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01320 2 181 MYB Transcription Factor Family AT1G66370 50.000 6.85e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01320 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01320 - K16166 pvu:PHAVU_008G038600g 369.007