Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01317 ATGGAAGGATCATCATCATCATCAGGTGTGAGAAAAGGAGCATGGAGCAAATTTGAAGATGAACTTCTCAAAGCATGCGTGCATCTCTATGGGGAAGGAAAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAATAGATGCAGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGAGAGGAGATTTCAGTGAAGATGAGGTTGATTTGATCATCAGATTGCATAAGCTTTTGGGAAACAGGTGGTCCCTGATTGCAGGAAGACTTCCGGGAAGAACTTCAAATGATGTGAAGAATTACTGGAACACCTACACACGACGTAAATTACACTCTCACAACAAAGATAACAACGTAAAACAGCATCATGAGACCGAACCAACACTGAAACCCCATCAAGTTATAAAGCCTGTACCTCGAGCTTTATCAAAAACTTGCCCCAAGTTACTGCAAGGGAGATTTATAAATAGTTCCAAAGTTGGTGTTAGTGAAGAAGGTGCAACTTCTTCATCTAGGTCTGGGAATTGGTGGGAAACTCTGTTAGATGAGAAGGAACACAATTTTGGAGATTTTGAGTTTGGTTCAATTGCTCGTGACTTTCTTACAGAAGTGCAAGCCATGGAAGAATCATCAGGTGTGAGGAAAGGAGCATGGAGTAAATTTGAAGATGAACTTCTCAAAGCATGCGTGCATCTCTATGGGGAAGGAAAATGGCACCTTGTTCCTCAGAGGGCAGGGTTGAACAGATGCAGAAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTAGTGAGGATGAGATTGATTTGATTATCAGAATGCATAAACTTTTGGGAAACAGGTGGTCCCTGATTGCAGGAAGACTTCCAGGAAGAACTTCAAACGATGTGAAGAATTACTGGAACACCTACACACGACGTAAATTACACTCTCACAATAAAGATAACAACGTAAAACAGCATCATGAGACCGAACCAACACTGAAACCCCACCATGTTATAAAACCTGTACCTCGAGCTTTATCAAAAACTTGCCCCAAGTTGCTGCAAGGGAAATTTATAAATAGTTCCAAAGTTGGTGTTGTTGAAGAAGGTACAACTTCCTTATCAGGGTCTGGGAATTGGTTTGAAACTTTGTTAGATGAGAAGGGAGAGAATATTGCAGTTAACAACAAGACATGCTTCTTTAGAGAGAAAGATGGAGTGTTTGAACAATGGGATGAAGATCTTTCAATTGCTTCTCACTTTCTTACAGAAGGTGAAACTTGGAGCGATATTTTTCTTGACCTAGGAATTAATTAG 1338 0.4021 MEGSSSSSGVRKGAWSKFEDELLKACVHLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEVDLIIRLHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYTRRKLHSHNKDNNVKQHHETEPTLKPHQVIKPVPRALSKTCPKLLQGRFINSSKVGVSEEGATSSSRSGNWWETLLDEKEHNFGDFEFGSIARDFLTEVQAMEESSGVRKGAWSKFEDELLKACVHLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSEDEIDLIIRMHKLLGNRWSLIAGRLPGRTSNDVKNYWNTYTRRKLHSHNKDNNVKQHHETEPTLKPHHVIKPVPRALSKTCPKLLQGKFINSSKVGVVEEGTTSLSGSGNWFETLLDEKGENIAVNNKTCFFREKDGVFEQWDEDLSIASHFLTEGETWSDIFLDLGIN* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01317 445 ProSiteProfiles Myb-like domain profile. 267 317 IPR001005 -
Lapu1g01317 445 SMART sant 271 319 IPR001005 -
Lapu1g01317 445 SMART sant 64 112 IPR001005 -
Lapu1g01317 445 SMART sant 218 268 IPR001005 -
Lapu1g01317 445 SMART sant 11 61 IPR001005 -
Lapu1g01317 445 Gene3D - 219 271 - -
Lapu1g01317 445 Gene3D - 12 64 - -
Lapu1g01317 445 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lapu1g01317 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 270 IPR017930 -
Lapu1g01317 445 SUPERFAMILY Homeodomain-like 216 313 IPR009057 -
Lapu1g01317 445 ProSiteProfiles Myb-like domain profile. 214 266 IPR001005 -
Lapu1g01317 445 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Lapu1g01317 445 CDD SANT 221 266 IPR001005 -
Lapu1g01317 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Lapu1g01317 445 FunFam Myb transcription factor 219 271 - -
Lapu1g01317 445 FunFam Transcription factor MYB113 274 345 - -
Lapu1g01317 445 CDD SANT 275 316 IPR001005 -
Lapu1g01317 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 271 321 IPR017930 -
Lapu1g01317 445 CDD SANT 68 109 IPR001005 -
Lapu1g01317 445 FunFam Myb transcription factor 12 64 - -
Lapu1g01317 445 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Lapu1g01317 445 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Lapu1g01317 445 Gene3D - 274 343 - -
Lapu1g01317 445 Gene3D - 67 136 - -
Lapu1g01317 445 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 130 - -
Lapu1g01317 445 CDD SANT 14 59 IPR001005 -
Lapu1g01317 445 FunFam Transcription factor MYB113 67 138 - -
Lapu1g01317 445 Pfam Myb-like DNA-binding domain 219 266 IPR001005 -
Lapu1g01317 445 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Lapu1g01317 445 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Lapu1g01317 445 Pfam Myb-like DNA-binding domain 272 316 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01317 Lapu-Chr1 25919200 25928178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01317 212 354 MYB Transcription Factor Family AT1G66370 59.864 6.04e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01317 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01317 - K16166 gmx:100780023 367.081