Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01316 ATGAAAGGAACATTATCAGGTGTGAGGAGAGGAGCATGGTGTCAAACAGAAGATGACCTTCTCAGAAACTGCGTTCAACTTTATGGCGAAGGAAAATGGCACCTTGTTCCTCAGAGAGCAGGGTTGAACAGGTGCCGGAAGAGTTGTAGATTGAGATGGTTGAACTATTTGAAACCAAATATCAAGCGAGGAGATTTTAGTGATGATGAGGTTGATTTGATGATCAGATTGCATAAGCTTTTGGGAAACAGACTTCCCGGAAGAACTTCAAACGACGTGAAGAATTACTGGAACACCAACATGCGCCGCAAAGTACACTCTCACAACAAAGAAGATGAGGACAACAACAACGTAAAAGAATCCGAAACAACTATGACACCCCACCAAGTGATAAAGCCTGTGCCTCGAACTTTGCCAAAAGCATCGCCCTTGCTGCAAGGAAAATTCACCAGCAGTTCCAAAGTTGGTGGTAGTGAAGCAGTTTCATCTGGGTCTGAGATTTGGTGGGAAACTTTGTTGGATGAGAAGGAAGAGAACATTGCAGTTAACAACAACACGTGCTTCTCTGGTGAGAAAGATGTTACGTTTGAGCTTTGGGGTGAAGAATTTAGTTCAATTGCTTCTGACTTTCTTACAGAAGGTGAAACATGGAGCGATTTTCTTCTTAATTAA 672 0.4256 MKGTLSGVRRGAWCQTEDDLLRNCVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLKPNIKRGDFSDDEVDLMIRLHKLLGNRLPGRTSNDVKNYWNTNMRRKVHSHNKEDEDNNNVKESETTMTPHQVIKPVPRTLPKASPLLQGKFTSSSKVGGSEAVSSGSEIWWETLLDEKEENIAVNNNTCFSGEKDVTFELWGEEFSSIASDFLTEGETWSDFLLN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01316 223 CDD SANT 66 101 IPR001005 -
Lapu1g01316 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 105 IPR017930 -
Lapu1g01316 223 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lapu1g01316 223 FunFam Myb transcription factor 10 62 - -
Lapu1g01316 223 CDD SANT 12 57 IPR001005 -
Lapu1g01316 223 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 140 - -
Lapu1g01316 223 SUPERFAMILY Homeodomain-like 7 97 IPR009057 -
Lapu1g01316 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Lapu1g01316 223 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Lapu1g01316 223 SMART sant 62 103 IPR001005 -
Lapu1g01316 223 SMART sant 9 59 IPR001005 -
Lapu1g01316 223 Gene3D - 65 129 - -
Lapu1g01316 223 Gene3D - 4 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01316 Lapu-Chr1 25905504 25906547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01316 1 174 MYB Transcription Factor Family AT1G66370 44.907 5.60e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu1g01316 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01316 - K16166 pvu:PHAVU_008G038600g 339.347