Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01309 ATGGCAAGGAAGAGAAAGGTTTCTGAAAAAGTTGAAGAGAGAAATCCATCTGATGAAACCATGGCATGGGATGAGATGATGAAGGAAGCCGCTGCACTAGGAAGTGGGAGGAGATTGAGGAAGAGATTTGTTGGGGTGAGACAAAGGCCTTCAGGAAGATGGGTAGCTGAGATAAAGGATACCATTCAGAAGATAAGAGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGTCTTCTTCGAGGTGCCAACACTAGAACAAACTTCTGGCCTAGTTCTCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATATCCTCCTTCAAAGGCTCAAAGCAAGGAACAACGCTAGAACAAACCCTTGCACTCTTTCTTCATCTTCCTCCTCCACATCTCTTTTTATCAACCAACAACAAATCCAACAAGAAGATGTACGTGGAACTGAGTCAACATATTTCACATTGGACCAATTCTCAGATTTCCTTAATGATTCTGAAGATTACAGCACAAACAACAACGAGTTAAGTAATAAAAGTGCACAGATTGATTGCATCACAAGTAGTCTTGAATCATGTTTGAATGAAAAGGATGATTGCACGGAAAAAGAAAAAGAAATGGAAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATATAAATTCAGGAGGAGAAAGAGTGGAAGACAGCGAACAAAGAACTGATTTGAGTACTCAAGATTTTCAGTTCCTGGACAATGTTGTTCCATCTAGTTACCATCATTCACTTTTTGAGATTGCTGAAGAGATTGAGGAGCAGTTGGAGTCTGAGAACTATGGTGATGATGAGCCTTCAATGCTTAGAGAAGTTATGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCGGAATGCTTGAAGTTGAAACTTGAATCTGGAAACAAAAATGGAAGTGGGGTTTGTAATCAACTAACCAACCTCAAGATGGCTTGTAGCAAAAACAAAATTGAGGGTATCGAGAAGAATGAAGAATACATAGAAGCAATGAGTAGGAAAGAGCCACAAACAGCAATTGGCATGGAGTGCTCCTCCCCCACTTTTTCATCAAGTATTGATGATGAACTGTTACTATGGAATTCACTTGATCTTCCTACTATTTGTTGTGTTAACTAG 1218 0.4015 MARKRKVSEKVEERNPSDETMAWDEMMKEAAALGSGRRLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSSQSSSTPALPSKITNILLQRLKARNNARTNPCTLSSSSSSTSLFINQQQIQQEDVRGTESTYFTLDQFSDFLNDSEDYSTNNNELSNKSAQIDCITSSLESCLNEKDDCTEKEKEMEMEFDFNSVTQTSSADINSGGERVEDSEQRTDLSTQDFQFLDNVVPSSYHHSLFEIAEEIEEQLESENYGDDEPSMLREVMKRMKYERKFSASLYAFNGIPECLKLKLESGNKNGSGVCNQLTNLKMACSKNKIEGIEKNEEYIEAMSRKEPQTAIGMECSSPTFSSSIDDELLLWNSLDLPTICCVN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01309 405 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lapu1g01309 405 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Lapu1g01309 405 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Lapu1g01309 405 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lapu1g01309 405 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lapu1g01309 405 MobiDBLite consensus disorder prediction 225 249 - -
Lapu1g01309 405 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Lapu1g01309 405 Coils Coil 200 220 - -
Lapu1g01309 405 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Lapu1g01309 405 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Lapu1g01309 405 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 308 - -
Lapu1g01309 405 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01309 Lapu-Chr1 25864840 25866057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01309 40 118 AP2-EREBP Transcription Factor Family AT5G19790 70.886 1.00e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g01309 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01309 K09286 - gmx:100796159 607.446