Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01308 ATGGATGTACCAGCTGGCCGAGGTGGTGCTGGCCTGGACATGTTTCTACCAAATTATAAATTGGGAAAAACTCTTGGTATTGGATCTTTTGGCAAGGTGAAAATTGCAGAACATGTATTGACGGGTCATAAGGTTGCAATCAAGATCCTTAATAGACGCAAGATAAAGAACATGGAAATGGAAGAAAAAGCTGCTGCAGTGAGAAGAGAAATCAAAATTCTAAGATTATTCATGCATCCTCACATTATACGACTTTATGAAGTCATAGAAACTCCATCAGACATATATGTTGTGATGGAGTATGTGAAATCTGGAGAACTCTTTGATTACATAGTAGAGAAAGGTAGGTTGCAGGAAGATGAAGCTCGTAATTTTTTTCAACAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTAGTTCATAGAGATTTAAAGCCTGAGAATTTACTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGCTTGAGCAACATCATGCGTGATGGTCACTTTCTCAAGACCAGTTGTGGAAGCCCTAATTATGCAGCTCCTGAGGTTATCTCAGGGAAATTGTATGCTGGACCTGAGGTGGATGTCTGGAGCTGTGGTGTAATTTTATATGCTCTTCTTTGTGGCACTCTTCCTTTCGATGATGAAAACATTCCAAATCTCTTCAAGAAAATAAAGGGTGGGATTTACACCCTTCCCAGTTATCTATCTGCTGGAGCTAGGAATTTGATACCAGGGATGCTTGTGGTTGATCCTATGAGGAGAATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGTCTTCCACGTTATTTAGCTGTGCCACCACCAGATACACTGCAACAGGCCAAAAAGATTGATGAGGAGATCCTTCAGGAAGTGGTGAAGATGGGATTTGACAGGAATCAGTTAGTTGAATCCCTTCGGAACAGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAATCGGTTCCGTGTTTCCAGTGGTTATCTTGGAGCCGAGTTTCAAGAGTCCATGGATTCCAGTTTTAACCAAATGCATTCTAGTGAAGTTGCTTCTTCAGTTGTTGGACAACGCTTTCCAGGATATATGGATCATCCAGGAGTAGGATCGAGGCCACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGTCTCGAGCCCATCCTCGAGAAATAATGACAGAGGTCCTTAAAGCTTTACAAGAATTAAATGTTTGTTGGAAGAAAATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGTCATTCCTGGTCATCAAGAAGGAATGGTTAACAACAATAATGTGCATAGTAACCATTACTTTGGAGATGATTCCAACATTATTGAGAACGATGCTGTTTCTACTTCAAACGTGGTCAAATTTGAAGTGCAGCTTTACAAAACTCGTGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTGTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTAG 1557 0.4162 MDVPAGRGGAGLDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKAAAVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSYLSAGARNLIPGMLVVDPMRRMTIPEIRQHPWFQARLPRYLAVPPPDTLQQAKKIDEEILQEVVKMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSSFNQMHSSEVASSVVGQRFPGYMDHPGVGSRPQFPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWVAVIPGHQEGMVNNNNVHSNHYFGDDSNIIENDAVSTSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01308 518 Pfam Kinase associated domain 1 475 517 IPR001772 -
Lapu1g01308 518 FunFam Non-specific serine/threonine protein kinase 398 516 - -
Lapu1g01308 518 Gene3D Transferase(Phosphotransferase) domain 1 11 356 - -
Lapu1g01308 518 SMART serkin_6 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01308 518 CDD AMPKA_C 392 515 - -
Lapu1g01308 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Lapu1g01308 518 SUPERFAMILY UBA-like 284 333 IPR009060 GO:0005515
Lapu1g01308 518 PANTHER SERINE/THREONINE KINASE 18 339 - -
Lapu1g01308 518 CDD UBA_SnRK1_plant 296 336 - -
Lapu1g01308 518 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01308 518 FunFam Non-specific serine/threonine protein kinase 10 103 - -
Lapu1g01308 518 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Lapu1g01308 518 CDD STKc_AMPK_alpha 16 274 - -
Lapu1g01308 518 Pfam UBA/TS-N domain 296 332 IPR015940 -
Lapu1g01308 518 Coils Coil 50 70 - -
Lapu1g01308 518 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 295 335 IPR015940 -
Lapu1g01308 518 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 469 517 IPR001772 -
Lapu1g01308 518 SUPERFAMILY KA1-like 331 517 IPR028375 -
Lapu1g01308 518 SMART uba_6 297 334 IPR015940 -
Lapu1g01308 518 FunFam Non-specific serine/threonine protein kinase 10 352 - -
Lapu1g01308 518 Gene3D Kinase associated domain 1, KA1 398 516 - -
Lapu1g01308 518 ProSiteProfiles Protein kinase domain profile. 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01308 518 SUPERFAMILY Protein kinase-like (PK-like) 16 291 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01308 Lapu-Chr1 25848963 25858628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01308 19 274 CBL-interacting serine-threonine protein kinases AT4G24400 51.751 4.44e-91 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Lapu1g01308 Pkinase 1.5e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01308 K07198 - gmx:100796687 995.727