Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01306 ATGGGCTGTGCGAGCTCGAAGAAAGCGGTTGCCAGAGGCGGCTCCACGCCTCCGGGGCCGATCGCGGTGCGTTCGAGCTCGCGGAAGCGGTGCAATGGGAAGAGGCAAAACAGCATCGTGGAGGCGCGTGAGGGGGACGCGAAATTGGAGGAGGTGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTTCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCTGCTGGGTGGCCACCTTGGCTTACCTCTGTTGCTGGGGAAGCCATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAGTGTATTCCAAGCACGTGAAGTTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTGCGATTTGACAAATTTCAAGCCGATAGCATTAGGTTCATGGCGAGAGAAATAATAATTCTTCGCACACTTGACCACCCAAACGTCATGAAATTGGAGGGTATAATTACTTCACAACAATCAAACAGCATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTAGCTTCTCCTAATATAAAGTTCACTGACTCACAGATTAAGTGTTATATGAGACAGTTATTAAGTGGAATTGAGCATTGTCACCTTCGAGGTATTATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTATTCTCAAGATAGCAGATTTTGGATTAGCAAATACCCTTAGTCCAAATAGTAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAGCTATTGATGGGATCAACAAATTATGGAGTTTCGGTGGATCTATGGAGTGTGGGCTGTGTATTTGCAGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAAATGAGGTTGAACAATTACACAAAATTTTCAAGCTTTGTGGGTCTCCACCAGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTACTTACGAAACCTCTCTTCAAGAGAGGTGTAGAGGTTTTCCTGTAACTGCTGTAAACCTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTTCTGCCAAAGTATCCACCAAGCAAAGAAATGGATGCCAGAAGTCGGGAAGATGCGAGCAGGAAAAAGACTGTAGTTAAAGTGAGAGAGGCTGTAACATCAAAAAGGCATAGACGAGTCCACAAAGTTTCCCACGACCATATAAATTTCAACAAACCAGCTTTGAAAGAGGAAATACAGAATATTTCTCAAAATGCTGGTACAGATGATGGTCGGGCTCATGTTGCAAAAGTTAAAATAGGAGCTTTGAATAAAGAGCAACCAAAGCCTTCATGTGATGTTAAGTCTGAGGCTGCCCAAGTGGTGGATGGTTGGAATGGAAACGGTGTATACTCTGGACCAGCACTAGTCTCAGCATCCAGTGGCTTTACTTGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAACCTTTGCAAAAGGCATATATGATTTCACAAAACATGGGATAGAAGTTTCAGAGAGGAAACCCAGTTTCAACACAAGGCAACAGGACAGGACTTCCACCTATGTATTACCAAAATACCAGGCTCCTCGCATTCAACAAAAATCATTCGATGTAGCTGATACATACAACTCAAATAATTTCATGGAATTTGATTTCGCCGGTAAAATGGATGCTCTGTTAGATCAGGTAAGTTTGAAATCCTCAGGCGAATTTCACCACGTTTTATGTTCAAACAAAACCATAGGTTATCATTGTTGA 1944 0.4419 MGCASSKKAVARGGSTPPGPIAVRSSSRKRCNGKRQNSIVEAREGDAKLEEVKEWKKGSLRGSVSLRLSCRFVEAEQNAAGWPPWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSSVFQAREVETGRMVALKKVRFDKFQADSIRFMAREIIILRTLDHPNVMKLEGIITSQQSNSIYLVFEYMEHDLAGLVASPNIKFTDSQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGILKIADFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHKIFKLCGSPPEEYWKKSKLPLATMFKPQTTYETSLQERCRGFPVTAVNLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLLPKYPPSKEMDARSREDASRKKTVVKVREAVTSKRHRRVHKVSHDHINFNKPALKEEIQNISQNAGTDDGRAHVAKVKIGALNKEQPKPSCDVKSEAAQVVDGWNGNGVYSGPALVSASSGFTWAKRRKPEASSILSDGSRSKISALDPTFAKGIYDFTKHGIEVSERKPSFNTRQQDRTSTYVLPKYQAPRIQQKSFDVADTYNSNNFMEFDFAGKMDALLDQVSLKSSGEFHHVLCSNKTIGYHC* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01306 647 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Lapu1g01306 647 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Lapu1g01306 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Lapu1g01306 647 CDD STKc_CDK9_like 105 389 - -
Lapu1g01306 647 Gene3D Transferase(Phosphotransferase) domain 1 188 429 - -
Lapu1g01306 647 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Lapu1g01306 647 PANTHER CELL DIVISION PROTEIN KINASE 103 393 - -
Lapu1g01306 647 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01306 647 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01306 647 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Lapu1g01306 647 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01306 647 MobiDBLite consensus disorder prediction 1 37 - -
Lapu1g01306 647 FunFam probable serine/threonine-protein kinase At1g54610 188 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01306 Lapu-Chr1 25824607 25828856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01306 97 444 Core Cell Cycle Gene Families AT5G10270 46.027 2.08e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu1g01306 Pkinase 6.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01306 - - vum:124825561 1077