Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01301 ATGCCCAACACCTTCTCCTCTCTCCTCTGTTGGATTGGTAAAAAGTTGGGAAGAAGGAACGCAGTTAGTAATGGAGAGAGTGGGAACAACGACAACGTTGTGGGTGCCGTTGTTGTGGATGACAATCCATTTGGCAGCACGGTAGAGTGTTATGCTTGCACGCAGGTTGGCGTGCCGGTGTTCCACTCCACCAGCTGCGACAGTTTCAACCAGCCGCAATGGGAGGCTTCGGCTGGGTCCTCCCTGGTTCCGATCCAGAATCGCCCGAATAAGGTTCTTGGGTTTCGGGTCGTATCTGGTTCGAATATTGGACCGTTTGGGCGGGTTCTGGATCCGCGGAGCAAGCGCGTGCAAAAGTGGAACCGCGCGCTTCTGCTGGCGCGTGGGGTGGCGTTGGCGATAGACCCGCTCTTCTTCTACTCGCTGTCGATCGGGAGGCAGGGGTCGCCGTGCCTGTACATGGACGGGGGGCTGGCGGCGATGGTCACGGTGGCGAGGACGTGCGTGGACGCGGTGCACCTCTTGCACGTATGGCTGCAGTTCAGGCTGGCGTACGTGTCGCGCGAGTCGCTGGTAGTGGGGTGCGGGAAACTAGTGTGGGACGCGCGTGAGATCGCGTCGCATTACCTGCGATCATTGAAGGGGTTCTGGTTCGACGCATTCGTGATCCTCCCGGTTCCCCAGGCTGTGTTTTGGTTGATAGTGCCAAAATTGATAAGAGAAGAGCGGATTAAAATCATTATGACAATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCCAAGGTTTACCATAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGTACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTTATTGCTTCCCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGAGTTGCGTCATGCCTTCGGCAGCAGTGTGAGAGAAATAATGGATGCAATCTTTCTGTGTCATGCTCAGAGGAGGTATGCTACCAGTCTTTGTCAGGCGCAATAGGAAGTTCATGTGGTGGAAACTCAACAGTTCTTTTAAGAAAGCCTTTGTGCTTAGATGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCAAGCAATTCTTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGTAACTGGCTAGAAGTGATTTTCAGTATATGCATCGTACTCAGTGGACTATTGCTTTTCACATTATTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTGAGATGTCGAGATATGGAATGGTGGATGAGGAGGAGGCAGTTGCCATCACGATTAAGACAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCGATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCCATCTTTGCCTCGACCTCATTAGAAAGGTTCCTTTGTTCCACAACTTGGATGACCTTATTCTTGACAACATCTGTGATAGGGTGAGGCCCCTAGTCTTCTCTAAAGATGAAAAGATAATCAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATCGTCCGAGGACGCATAAAACGCAGCCAAAGTCTGAGCAAAGGCATGGTAGCCTCAAGCATCCTTGAGCCAGGAGGGTTTTTGGGTGACGAGCTACTTTCATGGTGCCTGCGCCGGCCGTTTATAGATAGACTTCCGGCCTCCTCGGCCACATTTGTGTGTCTTGAATCAGCAGAAGCCTTTGGGCTTGATGCAGAACACTTGAGGTACATCACTGATCACTTCAGGTACAAGTTTGCCAACGAGAGGTTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCAGTGACGCCTGTTCCTTGTCAGTGTGGAACCTGGCATATCAACCTAATGGGGTTGAAACTTACAAAGCAGGAACCCCCCAAAACTGAGGACCTAAGTGTACATCATCATATGATCAATTACCTAACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGGAGAAGAATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACTGATCGAGTATTAGCAATGTCATTTCCTTCTCAACGTATGCGAGCAATGTATCGAAACCCTCTCTGGCAGGTTAAATCTGTGTTGGACATGAGACATTACGAGCATTATAAGATCTATAATCTCTGTATAGAAGAAAGTTATGATCCAGCTCACTTCTATGGACGTGTGGAAGCATACCCTTTTGATGATAACCATGTGCCATCTCTTGAAATGATCAGAGCTTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCCAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACCGGATTAATGGTGTGTGCATACCTAACTTATTGTGGCATGTCAGCAGATGAGGCTCTTCAACTGTATGCAGATAGACGGACAACCAATAATGAAGGAGTATCAATACCAAGTCAACGACGTTATGTGACATATTGGGACACTCTACTTTCTAATTCTGTCCCTAGAGGAACTGGAACACCAAAAGTGAAGTTGCCACAACCGTGTAGCAGAGAATTGCGGCGAATCCGGCTTTATGATACAGTCAACATTGACACTATATTCTTTGTCATCTCAGAGCTACATGAGGTTAGTTCAACACAATTTATGATACAACAATGTTTGGAATACTGA 2883 0.4686 MPNTFSSLLCWIGKKLGRRNAVSNGESGNNDNVVGAVVVDDNPFGSTVECYACTQVGVPVFHSTSCDSFNQPQWEASAGSSLVPIQNRPNKVLGFRVVSGSNIGPFGRVLDPRSKRVQKWNRALLLARGVALAIDPLFFYSLSIGRQGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSLKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCERNNGCNLSVSCSEEVCYQSLSGAIGSSCGGNSTVLLRKPLCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDDLILDNICDRVRPLVFSKDEKIIREGDPVPRMVFIVRGRIKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESAEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVPCQCGTWHINLMGLKLTKQEPPKTEDLSVHHHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLEMIRAFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVTYWDTLLSNSVPRGTGTPKVKLPQPCSRELRRIRLYDTVNIDTIFFVISELHEVSSTQFMIQQCLEY* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01301 960 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 101 677 - -
Lapu1g01301 960 SMART cnmp_10 523 649 IPR000595 -
Lapu1g01301 960 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 721 904 - -
Lapu1g01301 960 SUPERFAMILY Voltage-gated potassium channels 111 444 - -
Lapu1g01301 960 Gene3D Helix hairpin bin 449 514 - -
Lapu1g01301 960 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 740 903 IPR029021 -
Lapu1g01301 960 Pfam Tyrosine phosphatase family 836 874 IPR026893 GO:0004721
Lapu1g01301 960 ProSitePatterns Tyrosine specific protein phosphatases active site. 842 852 IPR016130 GO:0016311|GO:0016791
Lapu1g01301 960 Gene3D Jelly Rolls 521 639 IPR014710 -
Lapu1g01301 960 Pfam Ion transport protein 120 441 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu1g01301 960 Gene3D Protein tyrosine phosphatase superfamily 720 903 IPR029021 -
Lapu1g01301 960 CDD CAP_ED 523 633 IPR000595 -
Lapu1g01301 960 ProSiteProfiles Phosphatase tensin-type domain profile. 734 903 IPR029023 -
Lapu1g01301 960 ProSiteProfiles cAMP/cGMP binding motif profile. 523 633 IPR000595 -
Lapu1g01301 960 CDD PTP_PTEN 744 899 IPR045101 GO:0016791
Lapu1g01301 960 Gene3D - 152 446 - -
Lapu1g01301 960 SUPERFAMILY cAMP-binding domain-like 450 637 IPR018490 -
Lapu1g01301 960 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 822 877 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01301 Lapu-Chr1 25781738 25793223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01301 9 669 Ion Channels AT5G15410 77.117 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01301 K05391 - gmx:100798823 1255.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01301 1 25781738 25793223 Lapu1g01301 1 25781738 25793223 ECH