Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01293 ATGGAATTAAGCAATTGGGCCCAATCGCTGCAAACTGAAACCCCACTCCTCTCCTACCCCCAACCTTCTTATGCTCCTCCACCATCTCAGACTATGCTTTACCCCTCTTATCCTCAAAACCCTAACCCCTCTTCCTCTCTTCCCCTCAACCCTCCTGGGGTTGATTCCCTCCCCCTATCGAACCCTATTATCTATTCCGATCATGAATCCGTTCCCATTCCCAATTTGATCTATCCTCATACCCATGTTGGGGCTGATTCCAACTCGGTGGCCCCGTCTTCTGGGTACTATGTGGACCAGAACTGGACCGCCAGAGAGGCTGTTAGGCAATTTGGTTCTGACCCAACTTTCTATGCACCTAGCATCTCTGTACCATCCAATGGCTCAGAACAATTGGCTATGGTAGATCCTATCTCCATGTGGTGGGCAAATACCGCAACCCAACTTCCTGGCAATGGAATACTGAAGAAGAAACAAAAGAAAGCTAAAACTAAGGTTGTGCGACCTGCTTATTGTGATGTTTGTAAGATAGAATGCACGGGCAAGGAAGTTCTGGACCAACATAAATTAGGAAAGAAGCACAAGAAGAACTTGGAAAAACTAAGAGAATCGTTGAAACCAACCCAAGTTCAACCATCTGGATCATCTAATCCTGTAATAGGACCCCAATTGCCCGACGACAAAAGCAAATCAACCATTGGGAACAAGATTAAGAGAAAAAAAGTTGAAACTGTTGAAGACTTGGAGAAAAAGAAAAAGAAGGTTCTTGATGGAGGGGCAGCAGCCGAAGCAGTTAAGATATGTGCTATATGTAACGTGGTGTGTAATAGTGAGACAGTCTATAATTATCATCTTACTGGACAAAAGCATGCTGCTATGCTGGAGAAAGCATTTCATCATACTCAGTCCAATGCCAGTTGA 921 0.4463 MELSNWAQSLQTETPLLSYPQPSYAPPPSQTMLYPSYPQNPNPSSSLPLNPPGVDSLPLSNPIIYSDHESVPIPNLIYPHTHVGADSNSVAPSSGYYVDQNWTAREAVRQFGSDPTFYAPSISVPSNGSEQLAMVDPISMWWANTATQLPGNGILKKKQKKAKTKVVRPAYCDVCKIECTGKEVLDQHKLGKKHKKNLEKLRESLKPTQVQPSGSSNPVIGPQLPDDKSKSTIGNKIKRKKVETVEDLEKKKKKVLDGGAAAEAVKICAICNVVCNSETVYNYHLTGQKHAAMLEKAFHHTQSNAS* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01293 306 MobiDBLite consensus disorder prediction 17 53 - -
Lapu1g01293 306 MobiDBLite consensus disorder prediction 203 231 - -
Lapu1g01293 306 Pfam Zinc-finger of C2H2 type 171 194 - -
Lapu1g01293 306 Pfam Zinc-finger of C2H2 type 267 290 - -
Lapu1g01293 306 Gene3D Classic Zinc Finger 236 297 - -
Lapu1g01293 306 Gene3D Classic Zinc Finger 154 201 - -
Lapu1g01293 306 PANTHER ZINC FINGER PROTEIN 385B-LIKE 89 297 - -
Lapu1g01293 306 SUPERFAMILY beta-beta-alpha zinc fingers 265 297 IPR036236 -
Lapu1g01293 306 MobiDBLite consensus disorder prediction 20 34 - -
Lapu1g01293 306 SUPERFAMILY beta-beta-alpha zinc fingers 164 202 IPR036236 -
Lapu1g01293 306 SMART ZnF_U1_5 263 297 IPR003604 GO:0003676|GO:0008270
Lapu1g01293 306 SMART ZnF_U1_5 167 201 IPR003604 GO:0003676|GO:0008270
Lapu1g01293 306 MobiDBLite consensus disorder prediction 204 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01293 Lapu-Chr1 25706480 25709751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01293 166 297 C2H2 Transcription Factor Family AT5G61190 34.091 1.61e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01293 - - gmx:100814580 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01293 1 25706480 25709751 Lapu1g01293 1 25706480 25709751 ECH