Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01291 ATGCTGATGTCTACCTCTAACTCTTTGATTCCTTTGGCCCTTTTAATGCTTCTCTCTGTACCAGCCTTCTCAGATGACAGTACATGGCGTAAAGCTCATGCAACTTTCTATGGTGACATGCAAGGTGGAGAAACCATGCAGGGTGCCTGTGGTTATGGTGATCTCTTCCAGCAAGGTTACGGGCTTGAAACCACAGCCCTAAGCACAGCACTGTTCAACAATGGTCTGAGTTGTGGTGCATGTTTTGAGATAAAGTGTGTGGACGATCCTCAATGGTGCATTCCCAATGCAGGCTCAATCATAGTAACTGCAACAAATTTCTGTCCACCCAATTACTCTCCACCAAATTTAGACCATTGGTGCAACCCTCCACAGGAACACTTTGATTTGTCCATGAAAATGTTCACCAAAATTGCCATATACAAAGCTGGGATCATCCCAGTGAACTATCGCCGCGTGCCATGCTCCAAAAGTGGGGGTGTGAAGTTCCAAACGGGAGGGAACCCTTATTGGCTTCAAGTTTTGCTGTACAACGTTGGCAATGCTGGTGATGTTTCTCAAGTGAGCGTTAAAGGGTCCAACACTAAAAATGGGTGGAACTCCATGTCTAGGGTTTGGGGACAGAATTGGGTGACTGGGCAGAACTTGGTGGGGCAAACCCTGTCCTTTCGGGTTGTTACCAGTGATGGAAAAGTGGCGGTGTTTAATGATGTTTTACCTTCCAATTGGCAATTTGGGCAGAGCTACGAGGCCAACACAAACTTTTAG 768 0.4648 MLMSTSNSLIPLALLMLLSVPAFSDDSTWRKAHATFYGDMQGGETMQGACGYGDLFQQGYGLETTALSTALFNNGLSCGACFEIKCVDDPQWCIPNAGSIIVTATNFCPPNYSPPNLDHWCNPPQEHFDLSMKMFTKIAIYKAGIIPVNYRRVPCSKSGGVKFQTGGNPYWLQVLLYNVGNAGDVSQVSVKGSNTKNGWNSMSRVWGQNWVTGQNLVGQTLSFRVVTSDGKVAVFNDVLPSNWQFGQSYEANTNF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01291 255 SMART dpbb_1 64 150 IPR007112 -
Lapu1g01291 255 CDD DPBB_EXPA_N 29 155 - -
Lapu1g01291 255 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Lapu1g01291 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Lapu1g01291 255 Pfam Lytic transglycolase 64 150 IPR009009 -
Lapu1g01291 255 Gene3D - 158 255 IPR036749 -
Lapu1g01291 255 PANTHER EXPANSIN-A15 14 252 IPR002963 GO:0009664
Lapu1g01291 255 SUPERFAMILY Barwin-like endoglucanases 28 178 IPR036908 -
Lapu1g01291 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 160 IPR007112 -
Lapu1g01291 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 251 IPR007117 -
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Lapu1g01291 255 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Lapu1g01291 255 Pfam Expansin C-terminal domain 161 240 IPR007117 -
Lapu1g01291 255 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Lapu1g01291 255 Gene3D - 18 156 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01291 Lapu-Chr1 25687167 25689382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01291 17 255 Expansin Gene Family AT5G39280 60.976 2.34e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01291 - - gsj:114422475 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01291 1 25687167 25689382 Lapu1g01291 1 25687167 25689382 ECH