Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01278 ATGGCGTTCTTAAATAAAATTGGAAATCTACTCAAGAATTCTGCTGTCAAGCACATGAATCAAGATTTTTCTGCGTCTACCCCGTCACTTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTCGGAGGTATTTCTTACAGCACTGATGATATGAGCCTGCGGGAGGCTTTTGCTCGCTATGGAGAAGTAATTGAGGCCAAGGTTATTATGGATCGTGAAACTGGCAGGTCAAGAGGTTTTGCCTTCATAACCTTTGCAACAAGTGAGGATGCATCTTCTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGGAGAGTTCGGGTGAATTATGCTACAGAAAGGTCACGTCCAGGGTTTGGTGGTGGTGGAGGTGGCTATGGTGGTGGTGGTGGATATGGTGGTAGCAGTGGTGGCTATGGTGGAGGTGGATATGGTGGCGGCAGCAGTGGTGGTTATGGTAGAGGAGGCTATGGTGGTAATAGTTATGGAGGTAATGATAACAGCAGGGGTGGAAGCTATGGAAGTGGTGGTTATGATGTTACGGGCAGCTATGGCGGTGGCAATGCTGAAACTAGCGGTGCTGAAGCTAGTAATTACCAATTCGGTGGAAATTCTGGTGGAGATTTTGGCCCAGCTAGTGGTGAATTTGGAAGCAACCAAAATGAAGGAACGGGCGCAGCAGACAATGGTGAATTCATTGATCCACTTGAAGACAATGTGAGGGGGAACGGTGATGAACCTGATGGCTATGCTCAGAGCAAGTAA 780 0.4731 MAFLNKIGNLLKNSAVKHMNQDFSASTPSLFQAIRSMSSAKLFVGGISYSTDDMSLREAFARYGEVIEAKVIMDRETGRSRGFAFITFATSEDASSAIQALDGQDLHGRRVRVNYATERSRPGFGGGGGGYGGGGGYGGSSGGYGGGGYGGGSSGGYGRGGYGGNSYGGNDNSRGGSYGSGGYDVTGSYGGGNAETSGAEASNYQFGGNSGGDFGPASGEFGSNQNEGTGAADNGEFIDPLEDNVRGNGDEPDGYAQSK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01278 259 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 36 208 - -
Lapu1g01278 259 MobiDBLite consensus disorder prediction 189 259 - -
Lapu1g01278 259 MobiDBLite consensus disorder prediction 190 209 - -
Lapu1g01278 259 PRINTS Eggshell protein signature 36 52 - -
Lapu1g01278 259 PRINTS Eggshell protein signature 207 225 - -
Lapu1g01278 259 PRINTS Eggshell protein signature 126 141 - -
Lapu1g01278 259 PRINTS Eggshell protein signature 157 167 - -
Lapu1g01278 259 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 139 - -
Lapu1g01278 259 Gene3D - 11 138 IPR012677 -
Lapu1g01278 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Lapu1g01278 259 SUPERFAMILY RNA-binding domain, RBD 23 150 IPR035979 GO:0003676
Lapu1g01278 259 SMART rrm1_1 41 114 IPR000504 GO:0003723
Lapu1g01278 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Lapu1g01278 259 CDD RRM2_NsCP33_like 41 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01278 Lapu-Chr1 25583012 25586411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01278 30 126 C2H2 Transcription Factor Family AT2G19380 35.052 2.86e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01278 K12741 - gmx:100818300 306.605