Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01276 ATGGGGCAAAGACAGATCTTTGCTCATTTGGTCATTTGGGTTCTGATGGTCCTAGTTGGAGCCTCTTGTGCTAAAGCAGGAGAAGGAGAAGCAGCTGATAGGATTTTGGCACTCCCTGGCCAGCCTAAGGTGTCATTTCAGCAGTTCTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCACAAAATCCTCTCACCAAACCTCTCGTCATTTGGCTTAATGGAGGTCCAGGATGTTCATCAGTGGCATATGGAGCATCAGAAGAGATTGGGCCATTTAGAATAAACAAAACAGCTTCTGGGCTGTACATTAACAAGTTTTCATGGAACACTGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCAGGCGTCGGCTTCTCCTACACCAACCGCTCCTCCGACCTCCTTGACACCGGCGACCACCGCACCGCCCAAGACTCTCTGGAATTTGTTCTTCGTTGGCTAGAACGGTTCCCCCGTTACAAAAACCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCTAAGGAAATCATGAACTATAACGCAAAAAGCAAGCACCCCATCAATCTGAAAGGCATAATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGGACAGTGACATATTGGTGGAGCCATGCTATGATCTCGGACCAGACTTACCGGCAACTTATGAGTACATGTGATTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCAGTGTATAGCTATGCCATGGATCAAGAATTCGGCAACATTGATCAGTACAACATCTATGCTCCTCCATGCAACAACTCTGATGGCAGTACCTCTCCCACCCGCCACACCATGCGCTTACCTCACCGACCCCATAAGGCTTTTAGGCATTGGTCTGGTTATGATCCATGTACAGAAAAGTATGCGGAGATTTACTACAACAGGCCTGATGTTCAGAAAGCACTCCACGCTAACTCAACTGGAATCCGTTATAGGTGGACTGCTTGCAGTGAGGTTTTGAATCGGAACTGGAATGATACAGATGTATCTGTTCTTCCCATTTATAGAGAGTTGATAGCTCACGGAATAAGAGTTTGGGTGTTCAGTGGGGACGTGGACTCAGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGTTGTCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTTGCAACTGTGAGAGGAGCAGGGCATGAAGTGCCTCTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCAAAGTCCTAA 1398 0.47 MGQRQIFAHLVIWVLMVLVGASCAKAGEGEAADRILALPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAQNPLTKPLVIWLNGGPGCSSVAYGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLDTGDHRTAQDSLEFVLRWLERFPRYKNRELYITGESYAGHYVPQLAKEIMNYNAKSKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSTSPTRHTMRLPHRPHKAFRHWSGYDPCTEKYAEIYYNRPDVQKALHANSTGIRYRWTACSEVLNRNWNDTDVSVLPIYRELIAHGIRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01276 465 FunFam Carboxypeptidase 29 287 - -
Lapu1g01276 465 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 446 IPR001563 GO:0004185|GO:0006508
Lapu1g01276 465 FunFam Carboxypeptidase 365 459 - -
Lapu1g01276 465 SUPERFAMILY alpha/beta-Hydrolases 38 463 IPR029058 -
Lapu1g01276 465 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Lapu1g01276 465 FunFam Carboxypeptidase 314 462 - -
Lapu1g01276 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Lapu1g01276 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185|GO:0006508
Lapu1g01276 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
Lapu1g01276 465 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Lapu1g01276 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Lapu1g01276 465 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Lapu1g01276 465 ProSitePatterns Serine carboxypeptidases, histidine active site. 429 446 IPR033124 GO:0004185
Lapu1g01276 465 Gene3D - 318 355 - -
Lapu1g01276 465 Gene3D - 365 459 - -
Lapu1g01276 465 Pfam Serine carboxypeptidase 40 458 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01276 Lapu-Chr1 25565387 25571815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01276 323 462 Calmodulin-binding Proteins AT2G22960 30.496 1.81e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01276 K16297 - gmx:100807680 904.434