Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01249 ATGGCCCAGTCCTTCGGTCAGACCGAGATTAACTGGGACAAGCTAGATAAAACTAGGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCGGTGGCACTTTATCCCATTTCGGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGGATGCTGTAGAGAGAAATGTGTTTTCTGTTGTGAAAGGACTACTTAAAACAGATGGCGTCCCTGGTCTGTATAGAGGGTTTGGCACAGTTATCACTGGTGCTATTCCTGCCAGAATAATATTCCTCTCCACTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCATTCAGACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGATTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCGGGCCATGCCCAGTATAACGGGGGTTTGGATGTTGCTCGCAAGGTTTTAAGAGCTGATGGCATCCGGGGATTGTATAGAGGGTTTGGTCTGTCTGTTATTACTTATTCACCTGCTAGTGCAGTATGGTGGGCAAGTTATGGTTCTAGCCAACGCGTCATTTGGAGATTTCTTGGCCATGATACCAAATATGATGAACGCACTCCTAGTCTGCAGAAAATAATGTCAGTTCAAGCTGCTGGAGGGATTATTGCTGGTGCATCTTCATCCTGCATTACAACCCCATTGGATACTATCAAGACACGATTACAGGTAATGGGTAATGAAAATAGAAGCTCTATAAAGCAAGTTGCTAAAGATTTAATCAATGAAGATGGTTGGAAAGGCTTTTATAGAGGGTTTGGCCCAAGATTCTTTAGCATGTCAGCGTGGGGCACTTCAATGATATTGACTTATGAGTACCTGATGCAAGCAAATATTGGAATAACTGTTCAACTTAAACTTTTGCTCTGA 966 0.4348 MAQSFGQTEINWDKLDKTRFYVVGAGLFTGVSVALYPISVVKTRLQVATKDAVERNVFSVVKGLLKTDGVPGLYRGFGTVITGAIPARIIFLSTLETTKVAAFRMLEPFRLSETTQAAIANGVAGMTSSIFAQSVFVPIDVVSQKLMVQGYSGHAQYNGGLDVARKVLRADGIRGLYRGFGLSVITYSPASAVWWASYGSSQRVIWRFLGHDTKYDERTPSLQKIMSVQAAGGIIAGASSSCITTPLDTIKTRLQVMGNENRSSIKQVAKDLINEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLMQANIGITVQLKLLL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01249 321 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Lapu1g01249 321 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Lapu1g01249 321 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Lapu1g01249 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
Lapu1g01249 321 Gene3D Mitochondrial carrier domain 21 311 IPR023395 -
Lapu1g01249 321 FunFam Mitochondrial substrate carrier family protein 21 311 - -
Lapu1g01249 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Lapu1g01249 321 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 308 - -
Lapu1g01249 321 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Lapu1g01249 321 Pfam Mitochondrial carrier protein 119 205 IPR018108 -
Lapu1g01249 321 Pfam Mitochondrial carrier protein 229 307 IPR018108 -
Lapu1g01249 321 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Lapu1g01249 321 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01249 Lapu-Chr1 25336603 25341949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01249 10 306 Chloroplast and Mitochondria Gene Families AT5G15640 76.254 3.22e-168 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01249 K15121 - gmx:100782750 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01249 1 25336603 25341949 Lapu1g01249 1 25336603 25341949 ECH
Lapu4g01273 4 29693855 29700518 Lapu1g01249 1 25336603 25341949 PCT