Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01238 ATGGTAGCTATGATGGGTTGCCTAGCAACAGACAAAGGGTGGAGGAAAGGCCCTTGGACTGGTGAAGAGGACAAGTTACTGAGTGAATATGTTAGCTTGCATGGGGAAGGTAGGTGGAGTTCAGTCGCAAAGTTTACAGGATTGAATAGGAGCGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAAGCCTGGCCTCAAGAAAGGTCAATTGACACCTATGGAAGAAGGAACCATTATGGAACTACATGCAATTTTGGGTAACAAGTGGTCTACAATAGCAAAGTACTTGCCAGGTAGAACAGATAACGAGATCAAGAACTACTGGAGAACCCACTTTGGGAAGAGGGAGAAATCCAAACACAAGAAGCTGCAAAGGCGACAGAAGGAACAACAACCTGAAAAGTGTGATTTCAAAAGCATCATGTGTCACAAGGATAACATAAGAGAAACAAAATCCTTTGAGACACAAAATAATAAGCAACAAGAAATTGGTTTGATGTACCCAACAATATTAGATAACCAATATAATACCGTTCCTTCCATGCATGAGGGTTTCTCTTCCACGTGGCCAGACACTCTAGTGGATGATGGCTTATGGGACTTTGATGAACCACTGAGTTTTGCAGATTATGTTAACCAGTTTAGCAAATGTGCGATGCCAAATGAAGCCACATTTTCTGTTGGAGGGGATTCCACGCAAAATCATGAAAAAACTTGTTGTTTTGATGATTCATATGGTAACCTCTTCTGCATGTTTGGATGA 768 0.4141 MVAMMGCLATDKGWRKGPWTGEEDKLLSEYVSLHGEGRWSSVAKFTGLNRSGKSCRLRWVNYLKPGLKKGQLTPMEEGTIMELHAILGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKSKHKKLQRRQKEQQPEKCDFKSIMCHKDNIRETKSFETQNNKQQEIGLMYPTILDNQYNTVPSMHEGFSSTWPDTLVDDGLWDFDEPLSFADYVNQFSKCAMPNEATFSVGGDSTQNHEKTCCFDDSYGNLFCMFG* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01238 255 Gene3D - 72 143 - -
Lapu1g01238 255 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lapu1g01238 255 CDD SANT 73 114 IPR001005 -
Lapu1g01238 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Lapu1g01238 255 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Lapu1g01238 255 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lapu1g01238 255 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lapu1g01238 255 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 14 211 - -
Lapu1g01238 255 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lapu1g01238 255 SMART sant 15 65 IPR001005 -
Lapu1g01238 255 SMART sant 68 116 IPR001005 -
Lapu1g01238 255 FunFam Myb transcription factor 16 68 - -
Lapu1g01238 255 CDD SANT 18 63 IPR001005 -
Lapu1g01238 255 Gene3D - 16 68 - -
Lapu1g01238 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01238 Lapu-Chr1 25247500 25248788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01238 13 210 MYB Transcription Factor Family AT3G30210 50.943 2.23e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu1g01238 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01238 K09422 - gmx:100785540 389.423