Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01232 ATGGGTTCAGTTTGTTGCTGCTTTAATGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCCTGTATATAGGAACTGTATGTGTCTCAGCTGCTTCGTACAGAACTTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGCACATGCAATGCCTTCATCTATACAGGGTACAACATCTATGACTTCTACAGCTTCACATGATAATTCTTTATCGGACATGTACCGCTCTCCTCCAAGGCCCTTGCCTTATGATTCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAAGAGGTGATGTAGATGCTGACTCAGAATCTTTAAATTCGGGTGGTAAATGGAATGGTACCAGTGAAGATGGATCAAAGGAATACCGAAAGTCCTCTGTGAGACTTTCATCAGCAAAACTTACAACTGGAGCTGGGGTTGTCTATTCGTCATCGGAAGTGGAGGATGTCTGTCCGACATGTCTCGAAGAATACACTGAAGAAAATCCGAAGATAATGACAAAATGCTCTCATCATTTCCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCCGTTTGTGGGAAGGAGATGGTATTCGATGAAACGACTTAA 678 0.4189 MGSVCCCFNVDDFEDYMNPNSPVYRNCMCLSCFVQNFLTVYASIFRRGEAHAMPSSIQGTTSMTSTASHDNSLSDMYRSPPRPLPYDSDPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDVDADSESLNSGGKWNGTSEDGSKEYRKSSVRLSSAKLTTGAGVVYSSSEVEDVCPTCLEEYTEENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKEMVFDETT* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01232 225 MobiDBLite consensus disorder prediction 54 152 - -
Lapu1g01232 225 MobiDBLite consensus disorder prediction 91 123 - -
Lapu1g01232 225 FunFam E3 ubiquitin-protein ligase At3g02290-like 152 222 - -
Lapu1g01232 225 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
Lapu1g01232 225 CDD RING-H2_AIRP1-like 172 219 - -
Lapu1g01232 225 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 55 223 - -
Lapu1g01232 225 SMART ring_2 175 215 IPR001841 -
Lapu1g01232 225 MobiDBLite consensus disorder prediction 54 75 - -
Lapu1g01232 225 Pfam RING-H2 zinc finger domain 169 215 IPR024766 GO:0008270
Lapu1g01232 225 SUPERFAMILY RING/U-box 171 222 - -
Lapu1g01232 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 223 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01232 Lapu-Chr1 25192517 25199966 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01232 1 224 C3H Transcription Factor Family AT5G15790 59.740 1.68e-95 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01232 - - gmx:100788192 440.654