Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01231 ATGTTTCTAAAATGTTTTGGTGACTCGAGTTCATCTGGGAGACAATATCCAACAGTGATAGAGCAGTTGTGCCGTCACTTTTCTGTCGGCGATCTTAGGAAATCAACCAACAATTTTGATAATAACAGAGTAATTGGACAGGGAGCATTTGCTATAGTATACAAAGGTTGTCTTCAACACGATGATGATTCTGATTACGCAGTCGCATTGAAGCGATGTAAAGTCAGTGAAGTGTTCGAAAAAGAAGTAGCGTTGTTGTGCCAGCTTCACCATCCTAACTGTGCGTCTCTTATAGGATTTTGCAACCACGAAAAGGAGAAGATTATTGTGTATGAGTACATGTCCAATGGATCTCTAGATCAATATCTGGGAGGTGAAGGTAGGGAAGCACTGTCATGGAAGAAAAGGGTAGAGATTTGCATAGGAGCAGCGCGTGGACTACACTACCTTCATGCAGGACTCAAGCGCACCATCATTCACCACAGCATCAATCCTAGTAACATTCTTTTGGATGACAACATGCACCCAAAACTCTCAGGTTTCAGCTGTAGCATACAGGGAGCACATTTCAAGAAAAAGCCAAAACCAATTGAAACATCTTATGCAGGTACTTATGGCTACATTCCTATCGAGTACTTCAGGGACGGTACTGTCACAGATAAATGTGATGTTTATGCATTTGGTGTGGTTCTACTAGAAGTTGTAAGGGGAAGAGAAATTCGTGAATGGTATCACACTCAT 741 0.417 MFLKCFGDSSSSGRQYPTVIEQLCRHFSVGDLRKSTNNFDNNRVIGQGAFAIVYKGCLQHDDDSDYAVALKRCKVSEVFEKEVALLCQLHHPNCASLIGFCNHEKEKIIVYEYMSNGSLDQYLGGEGREALSWKKRVEICIGAARGLHYLHAGLKRTIIHHSINPSNILLDDNMHPKLSGFSCSIQGAHFKKKPKPIETSYAGTYGYIPIEYFRDGTVTDKCDVYAFGVVLLEVVRGREIREWYHTH 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01231 247 ProSiteProfiles Protein kinase domain profile. 39 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01231 247 Gene3D Transferase(Phosphotransferase) domain 1 114 246 - -
Lapu1g01231 247 Pfam Protein tyrosine and serine/threonine kinase 42 236 IPR001245 GO:0004672|GO:0006468
Lapu1g01231 247 FunFam Receptor-like protein kinase ANXUR2 5 113 - -
Lapu1g01231 247 SUPERFAMILY Protein kinase-like (PK-like) 14 239 IPR011009 -
Lapu1g01231 247 Gene3D Phosphorylase Kinase; domain 1 8 113 - -
Lapu1g01231 247 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 241 - -
Lapu1g01231 247 ProSitePatterns Protein kinases ATP-binding region signature. 45 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01231 Lapu-Chr1 25187733 25188764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01231 7 241 Receptor kinase-like Gene Family AT5G39000 42.387 5.70e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lapu1g01231 PK_Tyr_Ser-Thr 1.2e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01231 - - var:108327132 335.495