Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01222 ATGGAGGTTGTTTTGGCGTCGTCGTCTGTTGACGGCGGAATAGGGTGCTGGGACCTTCACACCGGCGCGGAGCAGCTCCGCTACAAATCTTGCTCTTCCCCTTCTCACGGCCTTGTCGCCGTCGGTCATCGCTTCATTGCGTCCTCTCAGCTTCGAGAACCTTCAGCAACGTCTGGTTCTGTTCTCTTCTGGTCCTGGTCCAAGCCTCAAGTTGAAGTTAAGAGCTTCCCCGCTGAACCTATTAAGCCCCTTGCTTCTAATCACCTGGGAACCTACATTGCTGGTGGAGCTTTGTCTGGTGATATTTACTTGTGGGAAGTTGAAACGGGTAGATTGCTTAAGAAGTGGCGTGCACATTTTAGGGCGGTTACGTGTGTGGTTTTTTCTGAAGATGACTCGCTGTTGATATCTGGTTCTGAAGATGGAACCGTAAGAGTTTGGTCTCTCTTCATGATATTCGATGATTTCAGAGGTCAGCAGGCAAATAATCTTTATGAATATAGTTTTTCAGGGCACACCCTGCGCGTGACTGATGTTGTTATTGGTAATGGAGGGTGCAATGCAATTATTGTGTCAGCTTCAGAGGATCGAACTTGCAAGGTATGGAGCTTATCGAGGGGAACATTACTAAGAAATATAGTATTCCCTTCAGTTATTGATTCCATTGCATTGGATCCAGCTGAACATGTCTTTTATGCTGGCAGTAGAGATGGAAAGATATTTATTGCTGCACTTAACACTGAAAGCGCTGCTACTAATAATTGTGGGATGCATATCATTGGTTCTTTTTCTAACCACAGCAAGGCAGTTACTTGCTTAGCGTATGGCACGAGTGAGAATTTGTTAATATCCGGATCAGAGGATGGAATGGTTCGTGTTTGGAATGCAAGAACTCGTAACATTGTTCGAATGTTCAAACATGCTAAAGGGCCTGTAAATAATATTCTCGTTGTTAGACGAGAAAACTTGAGTAATCACATATCTTCGAGTGTACAAACATCATCAAGAAAGCAAGGGGCTAATATACCCCCTCCATTGGAAAAATATGCAAATTCTGTAGATGAAGACTCAGATATGAAGACTACGATCAGTCTTGGGGGTGGCAAGAGTTCCATGGATCCTTCATACCTCAGTTCGCATGTGATATCTAATTACATTAAGGAACTTCAGCATCAAGGATCAGCTGCTGCTTCTGAAATGGAGACGGAGAAACTAAAACATGATTACCAAAGGTCAATGCAAATGGCTAACCAATGGAAGAAAATGTATGAAAACTTAAATAACTTCTGTGTAAAAGAACTGTTGGATGGTAGTGAAGCTAGAACCTTAGAATAA 1335 0.4307 MEVVLASSSVDGGIGCWDLHTGAEQLRYKSCSSPSHGLVAVGHRFIASSQLREPSATSGSVLFWSWSKPQVEVKSFPAEPIKPLASNHLGTYIAGGALSGDIYLWEVETGRLLKKWRAHFRAVTCVVFSEDDSLLISGSEDGTVRVWSLFMIFDDFRGQQANNLYEYSFSGHTLRVTDVVIGNGGCNAIIVSASEDRTCKVWSLSRGTLLRNIVFPSVIDSIALDPAEHVFYAGSRDGKIFIAALNTESAATNNCGMHIIGSFSNHSKAVTCLAYGTSENLLISGSEDGMVRVWNARTRNIVRMFKHAKGPVNNILVVRRENLSNHISSSVQTSSRKQGANIPPPLEKYANSVDEDSDMKTTISLGGGKSSMDPSYLSSHVISNYIKELQHQGSAAASEMETEKLKHDYQRSMQMANQWKKMYENLNNFCVKELLDGSEARTLE* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01222 444 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Lapu1g01222 444 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Lapu1g01222 444 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Lapu1g01222 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Lapu1g01222 444 PANTHER WD-REPEAT PROTEIN 18 2 435 IPR045227 -
Lapu1g01222 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Lapu1g01222 444 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Lapu1g01222 444 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Lapu1g01222 444 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Lapu1g01222 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Lapu1g01222 444 Gene3D - 215 329 IPR015943 GO:0005515
Lapu1g01222 444 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Lapu1g01222 444 Gene3D - 1 214 IPR015943 GO:0005515
Lapu1g01222 444 SMART WD40_4 69 106 IPR001680 GO:0005515
Lapu1g01222 444 SMART WD40_4 206 244 IPR001680 GO:0005515
Lapu1g01222 444 SMART WD40_4 162 203 IPR001680 GO:0005515
Lapu1g01222 444 SMART WD40_4 256 295 IPR001680 GO:0005515
Lapu1g01222 444 SMART WD40_4 109 148 IPR001680 GO:0005515
Lapu1g01222 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Lapu1g01222 444 SUPERFAMILY WD40 repeat-like 5 318 IPR036322 GO:0005515
Lapu1g01222 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Lapu1g01222 444 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01222 Lapu-Chr1 25136009 25141460 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01222 88 306 U-box Gene Family AT2G33340 25.676 3.90e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01222 K14829 - gmx:100791195 778.859