Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01217 ATGGCTAGGTCTGCAAAAGGGCATCAAGATGAATTGGAGGACGATGAAGAAGAAGAAGAATTCCTAACTGCAAACACCTCTTCCTCTCTCAACAAAGTGAAGGTGGACGAACCCAGCACGGGGAAGAGGGTGAATACGCATCGTTCGAAGCATTCAGAGACTGAGCAACGTAGAAGGAGCAAGATTAACGAAAGGTTTCAAGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGACAAGGCATCCTTCTTGTTGGAGGTTATCGAGTATATTCAGTTCCTACAGGAAAAATTACAAATTTATGAGCAGTCTTATGAAGGATGGAGTCAGGAGCCAACGAAATTAATTCCATGGAGAAATCATCACGGGCCTGCAGAAAATACTGCAGATCCTTCTCAAGCTATACAAAATGGGTCTGTCGATGAGAAAAACAACAGTGTCTCTCCATTGTTTCCGGGAAATGTACAGAACCCTATGGAGACTGACTTCTCAATGATGAGTGTTCAGAAGGGCCACACTCCTGGTTCATCTACAGAAGCAGTTCCCCTGACCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGTGGTATGGCAACTCAACATCTTCAGGAATCTGTTTCTAACATTGACATGCATTCCCATACCCAGCCACAAGTGTGGCTTGATAAATCAAACAAGGGCAACTATATTCTTCCGCATGATAGTACAATGAAGGAACAGGAGGAGCTGTTGATTGAATCTGGATCAGATAGCATTTCTAGTGCCTATTCTCAGGGAATTTTAGATACTCTCACGCAAGTGCTGCAGTCTTCGGGCGTAGATATGTCCCAGACTAATCTCTCGGTGCAAATTGATGTTGGCAGACGATCAAATGCTGGCTTGATCCCCTCTGCATATAGTTCAAAGGGTCATGAAAATCCATTTGCGAGCAACCCAGCAATATCACGTTCCGGAGTTGATTACTGCAATATTGAATCCGAACAAAGTTCGAAGAGGCTCAGACAAGAAGCAAGCTAG 1032 0.436 MARSAKGHQDELEDDEEEEEFLTANTSSSLNKVKVDEPSTGKRVNTHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQSYEGWSQEPTKLIPWRNHHGPAENTADPSQAIQNGSVDEKNNSVSPLFPGNVQNPMETDFSMMSVQKGHTPGSSTEAVPLTMQMRLDMFDPVVSSGMATQHLQESVSNIDMHSHTQPQVWLDKSNKGNYILPHDSTMKEQEELLIESGSDSISSAYSQGILDTLTQVLQSSGVDMSQTNLSVQIDVGRRSNAGLIPSAYSSKGHENPFASNPAISRSGVDYCNIESEQSSKRLRQEAS* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01217 343 SMART finulus 52 102 IPR011598 GO:0046983
Lapu1g01217 343 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Lapu1g01217 343 Coils Coil 93 113 - -
Lapu1g01217 343 Coils Coil 5 25 - -
Lapu1g01217 343 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 340 IPR044295 GO:0003700|GO:0006351|GO:0046983
Lapu1g01217 343 FunFam BHLH domain class transcription factor 44 116 - -
Lapu1g01217 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Lapu1g01217 343 MobiDBLite consensus disorder prediction 121 147 - -
Lapu1g01217 343 MobiDBLite consensus disorder prediction 128 147 - -
Lapu1g01217 343 CDD bHLH_AtBIM_like 45 121 - -
Lapu1g01217 343 MobiDBLite consensus disorder prediction 36 62 - -
Lapu1g01217 343 Gene3D - 44 117 IPR036638 GO:0046983
Lapu1g01217 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 125 IPR036638 GO:0046983
Lapu1g01217 343 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01217 Lapu-Chr1 25094029 25097879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01217 3 317 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 40.248 3.75e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu1g01217 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01217 - - pvu:PHAVU_008G025500g 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01217 1 25094029 25097879 Lapu1g01217 1 25094029 25097879 ECH