Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01214 ATGGTTGATCAAGGAGACTTAATTGTCATTTGTGTCTCTATTGGAGTGGCCCTTGGGGTTTTGATAGCTTGCTTAGTATATTTTGGCATAAGGTGGTACACGAAGCGAACTCATCTTAGCCGATCTGCGAATGAGCCCAGTTTAACAACTATCCCTATACGAACAAATGGATTAGGAACAAGCACTGACTTCAGTGCTTCCATCACCAGTTCCATTGCCACTTATAGTTCACCAATTCCTCAAAAGAACTCGCATCCATCTCGGTGGAATCATCAGAATAAAGATGGCTTTGCTTCTGCATCAGGCATTCTGAAGTACTCATACAAGGAAATTCAAAAGGCCACACAAAATTTCACAAATACTTTGGGAGAAGGGTCTTTTGGCACAGTTTATAAAGCCATGATGCCTACAGGAGAGGTGGTAGCTGTGAAGATGCTTGCACCCAATTCCAAACAAGGGGAGAAAGAATTTCTAACGGAGGTGCTTCTGCTAGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGGTACTGCGTAGATAAAGGACAGCTTATGCTTGTTTACGAGTTCATGAGTAATGGAAGTTTAGAAAACCTTTTATATGGTGAAGAAAAAGACTTGAGTTGGGATGAAAGGCTGCAAATTGCTATTGATATTTCACACGGTGTAGAATACCTTCATGAAGGGGCAGTACCACCTGTTGTGCATCGTGATTTGAAATCTGCTAATATTCTGCTAGATCACTCAATGAGGGCTAAGGTTTCTGATTTTGGGCTCTCCAAGGAAGAGATCTTTGATGGCCGTAATTCTGGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTTCCTCAAGCAAGTTCACAGTGAAGAGTGACATTTACAGTTTTGGTATAATAATTTTTGAGCTCATCACTGCCATCCACCCACATCAAAATTTGATGGAATACATCAACCTTGCTGCAATGGATTACGATGGCGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCAATGTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCTAGGAAACGCCCCTCTATAGGTGAGGTTTCGCAGGTCATATCGGGGATTAAGCAAAGGCGCCTCGTGAAAGAAGACACCATGTCATTTGCAAGCACCAACTTCTCCCGAAGTGTGAGTCAAATAGAGGAGCAACAGTTTGAATTAAGTAGAATAATCACTATGAACCACAGGGAAATGGGGTGA 1269 0.4184 MVDQGDLIVICVSIGVALGVLIACLVYFGIRWYTKRTHLSRSANEPSLTTIPIRTNGLGTSTDFSASITSSIATYSSPIPQKNSHPSRWNHQNKDGFASASGILKYSYKEIQKATQNFTNTLGEGSFGTVYKAMMPTGEVVAVKMLAPNSKQGEKEFLTEVLLLGRLHHRNLVNLLGYCVDKGQLMLVYEFMSNGSLENLLYGEEKDLSWDERLQIAIDISHGVEYLHEGAVPPVVHRDLKSANILLDHSMRAKVSDFGLSKEEIFDGRNSGLKGTYGYMDPAYISSSKFTVKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCNVEEVRQLAKIAHKCLHKSPRKRPSIGEVSQVISGIKQRRLVKEDTMSFASTNFSRSVSQIEEQQFELSRIITMNHREMG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01214 422 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Lapu1g01214 422 FunFam serine/threonine-protein kinase PBS1-like 85 191 - -
Lapu1g01214 422 Gene3D Transferase(Phosphotransferase) domain 1 192 399 - -
Lapu1g01214 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Lapu1g01214 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01214 422 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01214 422 CDD STKc_IRAK 122 378 - -
Lapu1g01214 422 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Lapu1g01214 422 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
Lapu1g01214 422 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 386 - -
Lapu1g01214 422 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Lapu1g01214 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01214 Lapu-Chr1 25069108 25075315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01214 63 375 Receptor kinase-like Gene Family AT3G19300 39.752 5.38e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lapu1g01214 PK_Tyr_Ser-Thr 2.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01214 - - gmx:100794239 746.117