Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01181 ATGGCTTCAACCAACCCTTCTCCAAATGCTTCCCCTGTTGCAGTGCCTCCAGTGCTTGGTGGTATTTTATCACCACCACCTTCTTCATCTACTCCAACCAATCCTTCCACCCCTCCATCACCACCCAATTCTTCCCAGCCTAATCAAACGCCCAATTCCCCAGCTCCTTCATCTCCCTCTGACCCTTCAGCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCTGTAACCCCTCCTCCTTCCATATCACTCTCTCCTCCACCGTCTTCTCCACCACCACCAACACTGCCCCCTCCTTCACCACCAGATTCTCCACCACCATTACCACCAGCATCTCCAACGCCACCAGTTGTAATATCTCCCCCCTCTCCACCAGCCACCACCATTTCCCCTCCTCCTGCTGAACTTCCACCTTCCCCTCCAGTTTTATCTCCACCATCTGCGCCGACTGTTTCCCCTCCTCCCCAATCACCTCCCGCTACAATTCCACCTCCTTCTCGACCAATTTCACCATCTCCTCCTCCTCCAGTCAATGTTCCAAGGCCACCATCCACCGGTACTCCTCCACAGAAAGAAAGTCCTCCAAAAACTACTCCTTCACATGCACCCCCTCCGCCAGTTTCTCAATCTCCTCCTAAGCCTCCTTCCTCTCAGGTTCCCCCTCCATCCACATTGCCATCAACTCCTCCTTCAGTCCCTTCGGGATCTTCACCTCCAGCTTCTTTGCCTGATCCCCCAACCAATGCAACAGCCACAGGGGGTCCACCGGTACCACTACCCTCGCTTCCAACTGAGAAACCCACTGCTAGACCAACTAATGATGGTTCTAACAATATAGCTTCAAACAGCACGCCTTCACATTCAGGAGGGTTAAGTGCTGGAGGATCCGTGGCTATTGGAATTATAGTTGGTTTTATTGTCCTCAGCCTTCTTGTTATGGCCGTGTGGTTTGTACAGAAGAAAAAGAAGAAGGAAAAAGGATCTAGAGGTGGTTATGCTGCTCCTTCTCCATTTACCTCTTCCCACAATTCAGGTACCTTATTCTTGAGGCCGCAGTCTCCGGCCAACTTTGTAGCGGGTAGTGGCTCTGGTAGTGATTTTGTGTATTCTCCATCAGAACCAGGTGGAGTAAGTAGCTCAAGATCATGGTTCACCTATGAAGAACTTATCCAAGCTACAAATGGATTTTCGGCACAAAATTTGCTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTCATAGATGGAAGAGAAGTAGCTGTGAAACAGCTCAAAATTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGTCGTGTACATCATCGTCATCTGGTTTCCCTAGTTGGTTACTGTATATCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTGTTCATTATCATCTCCATGATGAAAACAGACCAGTTCTGGATTGGCCTACCAGAATCAAGGTTGCTGCTGGTGCAGCTCGAGGAATAGCTTACCTACATGAAGACTGTCATCCACGCATTATTCATCGAGATATTAAGTCATCAAATATCCTTCTTGATCTCAACTATGAAGCTCGAGTTTCAGACTTTGGACTTGCAAAATTGGCATTAGATTCAAATACACATGTGACAACACGCGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTAACGGAAAAGTCTGATGTATATTCCTACGGGGTTGTGCTTTTGGAGTTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTTTGTTGAGTGAAGCACTTGATAAGGAGGACTTTGAATTCTTGGTGGATCCAAGACTGGGAAAGAACTATGATAGAAATGAAATGTTCCGGATGATCGAGGCTGCTGCAGCCTGTGTACGCCACTCATCTGTGAAGAGGCCACGTATGAGTCAGGTGGTGAGAGCCTTAGATTCCTTAGACGAGTTTACGGATCTCAACAATGGAATGAAACCGGGGCAGAGTTCGGTGTTTGATTCTGCACAGCAATCTGCACAAATAAGAATGTTTAGGAGGATGGCTTTTGGGAGCCAAGATAGTTCAAGTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGGGATCAGGACTCAATAACCATGTTTTCCCAAAACAAAACTGGGCCTTGGAATGTTTGA 2232 0.4767 MASTNPSPNASPVAVPPVLGGILSPPPSSSTPTNPSTPPSPPNSSQPNQTPNSPAPSSPSDPSAPPPSPPQAVPVTPPPSISLSPPPSSPPPPTLPPPSPPDSPPPLPPASPTPPVVISPPSPPATTISPPPAELPPSPPVLSPPSAPTVSPPPQSPPATIPPPSRPISPSPPPPVNVPRPPSTGTPPQKESPPKTTPSHAPPPPVSQSPPKPPSSQVPPPSTLPSTPPSVPSGSSPPASLPDPPTNATATGGPPVPLPSLPTEKPTARPTNDGSNNIASNSTPSHSGGLSAGGSVAIGIIVGFIVLSLLVMAVWFVQKKKKKEKGSRGGYAAPSPFTSSHNSGTLFLRPQSPANFVAGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKIGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTVHYHLHDENRPVLDWPTRIKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSYGVVLLELITGRKPVDASQPIGDESLVEWARPLLSEALDKEDFEFLVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDQDSITMFSQNKTGPWNV* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01181 743 MobiDBLite consensus disorder prediction 1 289 - -
Lapu1g01181 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Lapu1g01181 743 SMART serkin_6 395 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu1g01181 743 ProSitePatterns Protein kinases ATP-binding region signature. 401 423 IPR017441 GO:0005524
Lapu1g01181 743 MobiDBLite consensus disorder prediction 265 289 - -
Lapu1g01181 743 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 716 IPR047117 -
Lapu1g01181 743 Pfam Protein tyrosine and serine/threonine kinase 398 668 IPR001245 GO:0004672|GO:0006468
Lapu1g01181 743 MobiDBLite consensus disorder prediction 19 264 - -
Lapu1g01181 743 Gene3D Transferase(Phosphotransferase) domain 1 471 687 - -
Lapu1g01181 743 Gene3D Phosphorylase Kinase; domain 1 372 470 - -
Lapu1g01181 743 FunFam Proline-rich receptor-like protein kinase PERK8 368 470 - -
Lapu1g01181 743 SUPERFAMILY Protein kinase-like (PK-like) 373 668 IPR011009 -
Lapu1g01181 743 FunFam proline-rich receptor-like protein kinase PERK8 471 683 - -
Lapu1g01181 743 ProSiteProfiles Protein kinase domain profile. 395 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01181 Lapu-Chr1 24778721 24785133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01181 296 610 Trihelix Transcription Factor Family AT1G26150 67.722 2.31e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu1g01181 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01181 - - gmx:100784873 905.59