Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01177 ATGTTCCCTTCCTCTAATTACACCTCCTCAGGCTCTTACCCTCGTTTCCCTTCTTCGTCTTCTTCTTCTACTTCGCCCTATCCTTCTTTCACTTTCCTTCACCCTGAACATTCTTCCGCTAGCAACACCTTTCTCCATGATCCACTTTCTGTTACCTTCATACCAACTAATTATCATGCTCCAATCCCCGAAACACTAGCCAATTGGGCAGTTGGAGATTGTGCTGCTGCAGCAATGCTCAATCAGGATCTCGGTGGTGCCCTTTATGGCATCACCAAAAAACCAGTGAAGAAAACAGCCAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGCTTGAGGGATCGAAGGGTAAGGCTGTCCATTGAGATCGCACGCAAGTTCTTCGATCTTCAAGACATGTTAGGGTTTGATAAAGCCAGCAACACCCTTGACTGGCTCTTCACAAAGTCCAGGAAGGCAATTAAGGAGCTAACTCGAAGCAAGCACAGTGTTGATAGCTTCGAATTCACCTCATCTTCGGACGGTGAAGTGATTTCTGTGATCCACCAAGACCAACAACAACAACGACAGGGGGTAGACCTGGAAGAGGGGAAGTTGAAAGAACCTGCTTATTGTGTTAAAGCAAAGATGAAAGAATCAAGGGAAAAAGCAAGGGCAAGAGCAAGGGAAAGGACTAGTTGCAAGATATTGTGCAGTGGGGAAGGGAAGGTGCAAGAGTTGAAGAAAAAGTGCCCTGCAACTGAAAACCATCAAATCCTGAACCAGTTAAGGTCACCCCTTCAACCTCATCCCCAAGATGTGGATGGAGGAGTGCCAAGAGATGATGACTTCAACGTTATTGAGGAATCCATTGTCATCAAGAGAAAGTTGAAACACTCTCTGATGTCTTCCCTTCATCACCAAAACGCTGTGATCCCTAAGGAAGCAAGTGTAAACAACAGTGACTACCACTCCTTCCCCAATTTGTCGCCAAATTGGGAATCTAATAATACTGCCAATGGACGCTCCACTTTTTGTACGATAGCCAGCATGAATCTATCTACAGGGCTTCAAATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCTACCTAA 1107 0.4553 MFPSSNYTSSGSYPRFPSSSSSSTSPYPSFTFLHPEHSSASNTFLHDPLSVTFIPTNYHAPIPETLANWAVGDCAAAAMLNQDLGGALYGITKKPVKKTAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSRKAIKELTRSKHSVDSFEFTSSSDGEVISVIHQDQQQQRQGVDLEEGKLKEPAYCVKAKMKESREKARARARERTSCKILCSGEGKVQELKKKCPATENHQILNQLRSPLQPHPQDVDGGVPRDDDFNVIEESIVIKRKLKHSLMSSLHHQNAVIPKEASVNNSDYHSFPNLSPNWESNNTANGRSTFCTIASMNLSTGLQIFGKSWEECTNPHPT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01177 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 93 332 IPR005333 GO:0003700
Lapu1g01177 368 Pfam TCP family transcription factor 99 230 IPR017887 -
Lapu1g01177 368 ProSiteProfiles R domain profile. 213 230 IPR017888 -
Lapu1g01177 368 MobiDBLite consensus disorder prediction 1 22 - -
Lapu1g01177 368 ProSiteProfiles TCP domain profile. 101 159 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01177 Lapu-Chr1 24740860 24742870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01177 44 227 TCP Transcription Factor Family AT1G67260 39.901 7.05e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu1g01177 TCP 2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01177 - - gsj:114424268 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01177 1 24740860 24742870 Lapu3g00908 3 9823094 9825331 ECH
Lapu1g01177 1 24740860 24742870 Lapu1g01177 1 24740860 24742870 ECH