Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01170 ATGTCTGCAATGGTTTCAGCTCTTGCTCAAGTTATGGGAACCACCAATCGGAACCCTCCCATGCCACAATCAACCTCTTTTCCTCTCTCAACTTTCGACACCAAAGATGAACCTCAACGGGTGACAAAGAAGCCACACTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCTGCAGAAATTCGTGACCCCAAAAAAGCAGCGAGAGTGTGGCTAGGAACCTTTGAAACAGCAGAAGATGCGGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCCAAACTCAATTTCCCTGAAAGAGTTCATCATAATGTTGCTTACATGCAACAACACCAAGCTTCATCAAACACAAACACAAACATTTTTCCCTTCCATGCAACTTCTAACACTGCCACTGCCACTAGTGCCACTGACTCTGTTTCTTCTGTTGATGTTCTTGCTCCACCCTCATTTTCCACACATGATCAACATGGCCACCAAGTTTTTCCAAACCTGCTTCAATATGCACAGATTCTTTCAAGTGATGATGCAGAGTTTCCTTACTACACATCCCATCTTTTCAATCAACAGCAGCAGCAGCAGCAGCAGCAACAACAACCTTTCAGCTCTCAATTCTCTACCACTTTTTCTTCATCCTCTTCTCAAGCATCCTACTTCTACAACCAGCAACAACAATTTGGTGAACAGGGAGATGATCGCTCAGGCCAGTAG 726 0.4532 MSAMVSALAQVMGTTNRNPPMPQSTSFPLSTFDTKDEPQRVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHHNVAYMQQHQASSNTNTNIFPFHATSNTATATSATDSVSSVDVLAPPSFSTHDQHGHQVFPNLLQYAQILSSDDAEFPYYTSHLFNQQQQQQQQQQQPFSSQFSTTFSSSSSQASYFYNQQQQFGEQGDDRSGQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01170 241 Gene3D AP2/ERF domain 46 106 IPR036955 GO:0003700|GO:0006355
Lapu1g01170 241 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lapu1g01170 241 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lapu1g01170 241 PANTHER DNA-BINDING DOMAIN 34 210 IPR044808 GO:0003700|GO:0009873
Lapu1g01170 241 MobiDBLite consensus disorder prediction 29 49 - -
Lapu1g01170 241 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lapu1g01170 241 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Lapu1g01170 241 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Lapu1g01170 241 MobiDBLite consensus disorder prediction 193 214 - -
Lapu1g01170 241 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Lapu1g01170 241 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Lapu1g01170 241 CDD AP2 45 104 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01170 Lapu-Chr1 24685737 24688485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01170 4 192 AP2-EREBP Transcription Factor Family AT5G13330 48.421 9.22e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu1g01170 AP2 5.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01170 - - vun:114185501 317.005