Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01160 ATGGCAGCGGCCTTCCAGGAAGGTGGCGGTGGCGACGACGACGCCACCATCGACGTGCACACCACGCGTGGCACTCCCATCCGGTACCTTCCCCTCGACCACCTCTACTCCGCCACGTCGCCCTGCCGCGTCACTGCCAGCGGCTCCTCCAACGTCATGTCCAAGAAGGTCAAGGCTCGCAAACTCACCACGCTCGTGACTCATCCGCATCACCATTTGAATAACCACGACCACAAGAAAACGACGTCGTCCTCATCGTCCTCTTCCCAGCCTCCTTCTAAGCCTCCTCTCCTCTTCGTCTACTCGCGCCGCCGCAAGAGGCATTCCCCTTCCACGGCGCCGCCGTTTTACGATTCGCTGTGCAAAACCGAGGGCACGGTGAATGTGGACGAGAATGAGAACGAGAAGAGGCTTCTTAAGAAGAGGAAAATTGGGAGCACTGAGTTGGAGAGGCTGGGCGTGGATTTGAACACTGCGATTGGGGATGTTGACGGACCTCGATTGAGGGAATGCCGAAGCCAATTTGGGAATTCTGGTGCTGTTGGGAATGTTAAGTGTGGTTCCTTGGAGAATTTGCCGAAAGTGTCGCCCGATTCTCGCCCTGTGAAGAAATGGGTTGGGTTGAGTTTTGATAATGCTGATCCTGAGGTCTTTGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTGAAAGCGTACACAGGCTATGTCAAAAGTTATGACAAGGAAACTAAGATACATCATGTCAAGTACGATGATGGAGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAGATTCCATGTTTCCCGCGATGAGGTGAAACATTTAAAGTTGAATTTTGCCAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCAATGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCTAAGCTAACAGGCCATGCAATGTGGCCGGCTGTTGTTTTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTAAAGATGATGTTGGGAGGAAGATCGGTTCCTGTCCAATTTTTCGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAGTTGCAGAAAAGATGTGCAGCTGATAATTGTAACAATGTAAGCGGAGAGGATGGAGGATGTACAGATTCTGGTGATGATTGTTTAAATGGCGAGAGGACTTTAATGGCTCTTGAGAATGTTGAAACTTTTCCTTATGTAGTGGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTAGAAGATTCTGCGTTCAGGGATGGAAGATTCATCTGGCCGGAAGGGTACACAGCAGTGAGGAAGTTTACTTCAGTTACTGACCCAGAAGTTTTTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTTCGTCCTCTATTTAGAGTGACAGTTGATGGTGGTGAGCAGTTCAATGGTAATACTCCATCTGCTTGTTGGAGCGAGGTATACAAAAGGATAAAAAAAATGGAAAAGAATGCTTCTGAAGACACCCTTGCTGAAGGCAGGGTAGAAAAGGGTTACGAATCTGGGTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGCTTAAACTTGTGAAGGGATTGTCTAAATCCAAAATCTCGTCAAAGAATTCATTTTGCAAGTTAGGTTCGCAAAGACATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGATCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTGCATGCTAGATGTTATGGAGAACTAGAACCTGTTAACGGGGTGCTATGGTTATGCAACTTATGTCGTTCCGGTGCTCCACCTCCACCTTGCTGCTTATGCCCACTCATAGGTGGTGCAATGAAGCCTACTACAGATGGCCGATGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAACCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGCTATGCAGCATATGTGGGGTATCTTATGGTGCTTGCATCCAATGTTCAAATAGTTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTCGAGCTTGAAAATGAGGACAGGCTCTATCTACTTTCCGTTGATGACGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGACAGCCGTCTAATGAACATTCTGTTGCTGACGATCGTATAGTTCGAGTTGCTGGTCTATGTTCAGACTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAACCATATGATTACTTTGGCAGGAGAGGTCGAAAGGAACCTGAAGCACTTGCAGCTGCATCATTGAAACGATTGTTTGTGGAGAATCAGCCTTACGTAGTAGGTGGATACTGCCAGCATGGATCATTAAACGACCCAGAGCCTTCTGGCAGAGGAGTCTGCTCTAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGACACATCAAACAACATACTTTCTATCTCTGAAAAATACAAGTACATGAGGGAAACCTTTCGGAAACGGCTTGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAACATCCACATAAAGGTGGAGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCACCAATAGCTGACCGGAGAGAACACTTTATATACAATTCATTGGTGGGTGCTGGAACATATATGTTTCGAATTGACGATGAACGAGTCATTGATGCTACTAGAGCAGGAAGCATTGCTCATTTAATAAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTAATAAGTGTAAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTATTGTGGCTTCCCAAAGTGTCGAGGTATAGTAAATGATACGGAGGCAGAAGAGCGAGCTGCTACCCTATATGCACCACGACGTGAATTAATAGATTGGAGAGGAGAATGA 3285 0.4432 MAAAFQEGGGGDDDATIDVHTTRGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLTTLVTHPHHHLNNHDHKKTTSSSSSSSQPPSKPPLLFVYSRRRKRHSPSTAPPFYDSLCKTEGTVNVDENENEKRLLKKRKIGSTELERLGVDLNTAIGDVDGPRLRECRSQFGNSGAVGNVKCGSLENLPKVSPDSRPVKKWVGLSFDNADPEVFVGLRCKVYWPMDLKAYTGYVKSYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEVKHLKLNFAKVRDNNVSDYDVEEMLAMAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMMLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCAADNCNNVSGEDGGCTDSGDDCLNGERTLMALENVETFPYVVGDLQILSLGKIVEDSAFRDGRFIWPEGYTAVRKFTSVTDPEVFAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGNTPSACWSEVYKRIKKMEKNASEDTLAEGRVEKGYESGSDMFGFSNPKVLKLVKGLSKSKISSKNSFCKLGSQRHNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADDRIVRVAGLCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYVVGGYCQHGSLNDPEPSGRGVCSKFFCSQQRLRTSLIDTSNNILSISEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPHKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGIVNDTEAEERAATLYAPRRELIDWRGE* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01160 1094 CDD Tudor_Agenet_AtEML-like 219 269 - -
Lapu1g01160 1094 Gene3D - 301 413 - -
Lapu1g01160 1094 Pfam PWWP domain 315 402 IPR000313 -
Lapu1g01160 1094 Pfam F/Y rich C-terminus 519 592 IPR003889 GO:0005634
Lapu1g01160 1094 SUPERFAMILY Tudor/PWWP/MBT 308 408 - -
Lapu1g01160 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 806 IPR013083 -
Lapu1g01160 1094 ProSiteProfiles Zinc finger phorbol-ester/DAG-type profile. 608 671 IPR002219 -
Lapu1g01160 1094 SUPERFAMILY SET domain 912 1067 IPR046341 -
Lapu1g01160 1094 MobiDBLite consensus disorder prediction 66 97 - -
Lapu1g01160 1094 Pfam SET domain 941 1047 IPR001214 GO:0005515
Lapu1g01160 1094 ProSiteProfiles FYR domain FYRC motif profile. 517 603 IPR003889 GO:0005634
Lapu1g01160 1094 MobiDBLite consensus disorder prediction 80 95 - -
Lapu1g01160 1094 ProSiteProfiles FYR domain FYRN motif profile. 455 513 IPR003888 GO:0005634
Lapu1g01160 1094 FunFam Histone-lysine N-methyltransferase 863 1087 - -
Lapu1g01160 1094 Pfam PHD-finger 641 675 - -
Lapu1g01160 1094 Pfam F/Y-rich N-terminus 461 510 IPR003888 GO:0005634
Lapu1g01160 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 674 IPR013083 -
Lapu1g01160 1094 ProSitePatterns Zinc finger PHD-type signature. 629 674 IPR019786 -
Lapu1g01160 1094 Gene3D - 456 595 - -
Lapu1g01160 1094 SMART PWWP_4 312 375 IPR000313 -
Lapu1g01160 1094 SMART fyrc_3 521 615 IPR003889 GO:0005634
Lapu1g01160 1094 SUPERFAMILY FYVE/PHD zinc finger 620 690 IPR011011 -
Lapu1g01160 1094 PANTHER PHD FINGER PROTEINS 55 1078 - -
Lapu1g01160 1094 ProSiteProfiles Post-SET domain profile. 1054 1070 IPR003616 -
Lapu1g01160 1094 CDD SET_SETD1-like 918 1066 - -
Lapu1g01160 1094 Gene3D - 215 270 - -
Lapu1g01160 1094 Pfam PHD-zinc-finger like domain 682 803 - -
Lapu1g01160 1094 Gene3D SET domain 883 1084 IPR046341 -
Lapu1g01160 1094 SMART set_7 930 1054 IPR001214 GO:0005515
Lapu1g01160 1094 CDD PWWP_AtATX1-like 313 408 - -
Lapu1g01160 1094 ProSiteProfiles PWWP domain profile. 314 377 IPR000313 -
Lapu1g01160 1094 SMART fyrn_3 469 513 IPR003888 GO:0005634
Lapu1g01160 1094 ProSiteProfiles Zinc finger PHD-type profile. 626 677 IPR019787 -
Lapu1g01160 1094 SMART PHD_3 738 804 IPR001965 -
Lapu1g01160 1094 SMART PHD_3 628 675 IPR001965 -
Lapu1g01160 1094 CDD PHD_ATX1_2_like 628 674 IPR042010 -
Lapu1g01160 1094 ProSiteProfiles Extended PHD (ePHD) domain profile. 680 804 IPR034732 -
Lapu1g01160 1094 CDD ePHD_ATX1_2_like 689 803 IPR041956 -
Lapu1g01160 1094 FunFam Histone-lysine N-methyltransferase 678 806 - -
Lapu1g01160 1094 ProSiteProfiles SET domain profile. 930 1048 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01160 Lapu-Chr1 24571254 24585368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01160 629 774 C2H2 Transcription Factor Family AT3G14740 39.735 5.50e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu1g01160 zf-HC5HC2H_2 3.9e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01160 - - gmx:100806736 2017.66