Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01156 ATGACTCAGGCGGTGGAGGTGCTGAATAGGTATGGGACGGATATGGTGGGGGAGCCCAGGGGTTCTGATTCTGAGTGTTTGGCGGGTTTCGAGTGTTTTCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGTCTGGTGGTAGTTCCCCTCCTCTTCTTTCTGATACGGATGGGAAGAGGAGGAGGTTGAGGGGTTCCTCGTCCTTTGATTTCAAATTGCCTGGGAGGATGTTCTCGAATGGGTCAAGCGAGGTTGCATCCATGTTTTGTAAGCAAGGAAGAAAAGGGATCAACCAAGATGCTATGCTTGTTTGGGAGAACTTTTGCTCCAAGGAAGACACTATCTTTTGTGGTGTTTTTGATGGTCATGGACCTTACGGCCACAAAGTTGCGAAGAAAGTGAGGGATTCTTTTCCTTTAAAGCTTAATGCCCAATGGGATTTGCATCAAAAGAATAGAGATGGACTCAGTGATCATAGCAGTGCCAACGGAAGTTATAAATCTGAAGGGAATGGATTTAGACTAGTGGATGAGAAAACTAGCCCCACCGATCATGAACTTGATGAAACAGATATTACTTCGACATTAAGAGAATCTTTTCTGAAAGCTTGTAAGCTTATGGACAAAGAACTGAAAATGCATTCTGATATTGACTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCAAGGGCTGGACCTTGTTATTGGAAATATTGGGGACTCGAGAGCTATATTGGGTACCAGAGATCACGATGATTCTCTTATTGCTGTTCAGTTGACCATTGACCTTAAGCCAAATCTTCCAAGGGAAGAAGAGAGAATTAGGCTTCGTAGAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAAGTGGCTCGAGTTTGGCTGCCTAACTCTGATTTCCCTGGTCTTGCTATGGCTCGGGCATTTGGAGATTTTTGCCTGAAAGACTTTGGATTGATTGCTGTTCCAGATATCTCATATCACCACCTTACCGAGAAGGATGAGTTTGTTGTATTAGCAACAGATGGGATTTGGGATGTTTTATCAAATGAAGAAGTAGTGGATATTGTAGCATCTGCTCCACGGTCTACTGCTGCTAGAGCACTGGTTGAGTCAGCTGTTCAGGCTTGGAGAACAAAATATCCTTTTTGCAAGGTTGATGATTGTGCCGCGGTTTGCCTCTTCTTTGATCCAGATACAGATTTCAAGTCAAATGATACCAAAGGCAAGTTGGTATCGGAGGCATCTGTTGATCAATCTGAGCATTTATCTTGA 1302 0.4432 MTQAVEVLNRYGTDMVGEPRGSDSECLAGFECFLNIVRALGMGSCISEVGSGGSSPPLLSDTDGKRRRLRGSSSFDFKLPGRMFSNGSSEVASMFCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHKVAKKVRDSFPLKLNAQWDLHQKNRDGLSDHSSANGSYKSEGNGFRLVDEKTSPTDHELDETDITSTLRESFLKACKLMDKELKMHSDIDCFCSGTTAVTLVKQGLDLVIGNIGDSRAILGTRDHDDSLIAVQLTIDLKPNLPREEERIRLRRGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDISYHHLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARALVESAVQAWRTKYPFCKVDDCAAVCLFFDPDTDFKSNDTKGKLVSEASVDQSEHLS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01156 433 MobiDBLite consensus disorder prediction 158 194 - -
Lapu1g01156 433 ProSiteProfiles PPM-type phosphatase domain profile. 91 405 IPR001932 -
Lapu1g01156 433 PANTHER PROTEIN PHOSPHATASE 83 403 IPR015655 GO:0004722|GO:0006470
Lapu1g01156 433 MobiDBLite consensus disorder prediction 178 194 - -
Lapu1g01156 433 SMART PP2C_4 81 403 IPR001932 -
Lapu1g01156 433 MobiDBLite consensus disorder prediction 49 69 - -
Lapu1g01156 433 Gene3D - 85 406 IPR036457 -
Lapu1g01156 433 SUPERFAMILY PP2C-like 86 406 IPR036457 -
Lapu1g01156 433 FunFam probable protein phosphatase 2C 33 86 408 - -
Lapu1g01156 433 CDD PP2Cc 91 405 IPR001932 -
Lapu1g01156 433 MobiDBLite consensus disorder prediction 414 433 - -
Lapu1g01156 433 Pfam Protein phosphatase 2C 100 383 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01156 Lapu-Chr1 24510794 24517618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01156 62 406 PP2C-type Phosphatase Gene Family AT1G16220 59.664 2.41e-148 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01156 - - vum:124830906 836.254