Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01129 ATGGCTTCTTCACTCCCTCGAAGAAGAACGCACGCTCCCAAATCATCTTCCGCCCTAAACGACGACGTTTTCTGCCAGGAATGCAACTCCGGTCACTCCCCTGCCAAATTGCTTCTCTGCGACAAATGCGATCGAGGCTACCACCTCTTCTGCCTCCGCCCCATCCTCCCTTCTGTCCCCAAAGGCTCCTGGTTCTGCCGCTCCTGCTCCAGCCACAAACCTAAGTCTTTCCCCCTTGTGCAGACCAAAATAATCGATTTCTTTCGGATTCAACGCTCTCCCGAGACATTGTTGAATCAAGATGTGCGGAAGAAGCGAAAACGGGGTGGGAGCTTGGTGGTGTCGAAGAAGAAAAGGAAACTATTGCCGTTTGTGCCGAGTGAAGATCCAAAAAGGAGGTTAGAGCAGATGGCGTCGCTGGCCACGGCTTTGACTGCAACTAATACTGAGTTCAGCAATAAGCTTACTTACATGCCTAGAATGGCACCGAGGTCTGCTAATTGCCCTGCTCTTGAGCGTGGTGGAATGCAGGTCTTGTCAAGAGAAGATACGGAGACCTTAAACTTGTGCAAAAGTATGATGGAAAGAGGCGAATGGCCACCTCTCATGGTTGTTTTTGATCCTCTAGAAGGCTTCACTGTAGAAGCAGATAGATCCATCAAAGATTTAACCATAATTACAGAATATGTTGGAGACGTTGATTTTTTAAAGAACAGGGAAAATGACGATGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCGAAGACACTTGTGATCTGTCCAGACAAACGTAGCAATATAGCACGTTTCATTAATGGCATCAATAACCATACACCGGAAGGAAAAAAGAAACAAAACTTAAAATGCGTGAGATTTGATGTTGGTGGCGAATGTCGAGTTCTTTTAGTCTCCAATAGAGATATCACTAAGGGGGAAAGGTTGTACTATGACTACAATGGAGATGAACACGAGTATCCAACTGAACATTTTGTGTGA 1005 0.4577 MASSLPRRRTHAPKSSSALNDDVFCQECNSGHSPAKLLLCDKCDRGYHLFCLRPILPSVPKGSWFCRSCSSHKPKSFPLVQTKIIDFFRIQRSPETLLNQDVRKKRKRGGSLVVSKKKRKLLPFVPSEDPKRRLEQMASLATALTATNTEFSNKLTYMPRMAPRSANCPALERGGMQVLSREDTETLNLCKSMMERGEWPPLMVVFDPLEGFTVEADRSIKDLTIITEYVGDVDFLKNRENDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVGGECRVLLVSNRDITKGERLYYDYNGDEHEYPTEHFV* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01129 334 CDD PHD_RSF1 25 69 - -
Lapu1g01129 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Lapu1g01129 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Lapu1g01129 334 Gene3D SET domain 106 334 IPR046341 -
Lapu1g01129 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 84 IPR013083 -
Lapu1g01129 334 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 95 332 - -
Lapu1g01129 334 FunFam Histone-lysine N-methyltransferase ATXR5 105 334 - -
Lapu1g01129 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Lapu1g01129 334 CDD SET_ATXR5_6-like 197 334 - -
Lapu1g01129 334 SMART PHD_3 24 70 IPR001965 -
Lapu1g01129 334 SUPERFAMILY FYVE/PHD zinc finger 15 76 IPR011011 -
Lapu1g01129 334 Pfam PHD-finger 24 71 IPR019787 -
Lapu1g01129 334 SUPERFAMILY SET domain 192 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01129 Lapu-Chr1 24341679 24343753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01129 25 106 Core DNA Replication Machinery Family AT4G14700 34.940 6.44e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu1g01129 PHD 5e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01129 K24406 - gmx:100775247 622.083