Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01125 ATGGTGGGAAACGACGAAGCGGGTCACCTCTCCGCTTCCCGGAAAATGTTCTGGCGGTCCGCGTCTTGGTCCTCCTCCCGCACCGCCGCTGCGAACGCCTCCTCCGGCGAGGCGGTTAAGGGTTTCGCGGATTCTGGCAGCGGCGAAGGTCCTCACAGCCAGAACCGGCGGTTCCCTCCGCCGCCACTGACGCCTCGGTCGCAGAATTGTAAGGCGCGCTCTTGCTTGCCGCCGCTGCAGCCGCTCTCCATCGCCCGCCGGAGTCTTGATGAGTGGCCGAAGGCGGGCTCCGACGACATCGGCGAGTGGCCGCAACCGCCCACCACCCCCAGCGGGAGAGGTAATGGTAGCAATGGTGAAAGGTTGAAACTTGATTTGTCTTCCATTCAGCATAACAATCCTGATCATAGTAGGAGTAACAATGGTGGGCTTGTGAAGAGGGATAAGATTGCATTTTTTGACAAGGAGTGTTCGAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCATAATGGGATCACTCATGTGTTGAACTGTGTGGGGTTTGTGTGTCCTGAGTACTTCAAGGCTGATTTTGTGTATAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGTATCTTGTATGACGTATTTGACTACTTTGAGGATGTTAGGGAACAAGGTGGGAGGGTGTTTGTGCATTGTTGTCAAGGGGTGTCTAGGTCTACATCTTTGGTAATTGCTTACCTTATGTGGAGGGAAGGGCAAAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCCGCAAGAGGGATTGCTGATCCGAATATGGGTTTCGCTTGCCAGTTGTTGCAGTGCCAGAAAAGGGTCCACGCGTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATTTACAGGATTGCTCCTCACTCCCCGTATGATCCTTTGCATCTTGTTCCCAAAATGTTGATGGATCCTTCATCAGCTGCATTGGACTCCAGAGGCGCGTTTATTGTGCACATTCCTTCTGCAATATATGTTTGGATTGGTAAGAATTGTGAGGCCATCATGGAGAGGGATGCCCGAGGGGCTGTTGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGACCTATTGTGATGATTAAGGAAGGAGAGGAACCTGCTTACTTCTGGGATGCTTTTTCGAATTTTCTGCCCTTGATGGATAAATCTGGCAATGGAGTAGAAAATGAAAAATTAACTAGTAGAGTTTTGCCTGGTGAGAGGAGAGTGGAAGCATATGATGTTGATTATGAAGTTTTCAAAAAAGCAATCACGGGAGGATTTGTGCCTCCCTTTGCGTCATCGGAGAATGAACATGAAACCCATCTGCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTGCCTCTGCTAATATGAAGGAGTTTGTTTCGGCCCCTAGGTTATCCTTTCCTAGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAACTTGTCTCCATCCTCATCCCTTTCATCATCGTCATCATCTGTATCATCATCCTCTTCACCATCTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCCAAGTTTTTGGCAGAAGTGTCCCCAGATTCTTCGTCTGTGCTTTTGACTCCTATTCCCGTATCTTCTTCTTTGTCTAGTTTTTCTAATTTGTCGATCTCTTCAAATTCTACTTCTCAAACAGTGTCTAACAGTACAGATATCCTTGGGGTCAAGTTATCACATCCCTGGTCTCAGTCAGCCTCTTTACCATTGAAAAAACCGTCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCACTAAAGAATGACAAGAAACAAGTAATGGATAAGCCATCGACCTTCCATAATAGTCAAGAATATGACATTGTTATTAATGGCAATGTTAGCTATTTGCAACAAACAGATAGTAAAGATTATTTTTGTGAGTCTAACAACCATGCCAAGGGTGGAGGTGTGAATTCATTTCAAAAGTGTGAGCTGGCATTATGTCCAAGCATTGTTGACAGCATGCACGTCAAGGAATCATCACTTGTTCGGAACTCTAGTGAGCCTTTGATAGATAGTTCGTCAACAGAAGATGCATTGCTTGGTCAGTCTGCAGCATTGGAGGGAACTAATGAGAGTGGCTTACTGCACTTTAATGTCGCACAGACTTCGGTATATCATTGGCCCAGTTTAGAAAAGATTGAGACATTTGGTACAGGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTGTCTCCCAATATGCATGTACATGCAGGGAACATGTTATATATTTGGGTAGGGAGGTCTTTCAATTATGACGACTCACAGGTTCACTTGGATATTGATAAACAGTTAGATTGTTTAGGAGCTGTTGACTGGAATCAAATTGGTTGTGATCTCCTTGTTCGGTTTAGTTTGCCAAAGAACACAGTCATCAAGATTGTTAAAGAGAATGAGGAACCTTCAGAGTTCCTTGCTTTGCTGAGTTCATTGTAG 2574 0.4545 MVGNDEAGHLSASRKMFWRSASWSSSRTAAANASSGEAVKGFADSGSGEGPHSQNRRFPPPPLTPRSQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPSGRGNGSNGERLKLDLSSIQHNNPDHSRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRIYRIAPHSPYDPLHLVPKMLMDPSSAALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNGVENEKLTSRVLPGERRVEAYDVDYEVFKKAITGGFVPPFASSENEHETHLPARESSWSALRRKVASANMKEFVSAPRLSFPRVYSDSMLCIHTSANLSPSSSLSSSSSSVSSSSSPSYVSPDSISSDSSTHSKFLAEVSPDSSSVLLTPIPVSSSLSSFSNLSISSNSTSQTVSNSTDILGVKLSHPWSQSASLPLKKPSTSLAERRGSLSKSLKLPLKNDKKQVMDKPSTFHNSQEYDIVINGNVSYLQQTDSKDYFCESNNHAKGGGVNSFQKCELALCPSIVDSMHVKESSLVRNSSEPLIDSSSTEDALLGQSAALEGTNESGLLHFNVAQTSVYHWPSLEKIETFGTGHLDSKAAFVILSPNMHVHAGNMLYIWVGRSFNYDDSQVHLDIDKQLDCLGAVDWNQIGCDLLVRFSLPKNTVIKIVKENEEPSEFLALLSSL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01125 857 ProSiteProfiles Dual specificity protein phosphatase domain profile. 156 298 IPR020422 GO:0006470|GO:0008138
Lapu1g01125 857 MobiDBLite consensus disorder prediction 509 536 - -
Lapu1g01125 857 Pfam Dual specificity phosphatase, catalytic domain 164 294 IPR000340 GO:0008138|GO:0016311
Lapu1g01125 857 CDD DSP 157 291 - -
Lapu1g01125 857 MobiDBLite consensus disorder prediction 21 76 - -
Lapu1g01125 857 MobiDBLite consensus disorder prediction 93 121 - -
Lapu1g01125 857 Gene3D Severin 319 403 IPR029006 -
Lapu1g01125 857 PANTHER MKPA PROTEIN 12 854 - -
Lapu1g01125 857 SUPERFAMILY Actin depolymerizing proteins 305 412 - -
Lapu1g01125 857 SUPERFAMILY Actin depolymerizing proteins 759 855 - -
Lapu1g01125 857 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 297 IPR029021 -
Lapu1g01125 857 Gene3D Protein tyrosine phosphatase superfamily 131 298 IPR029021 -
Lapu1g01125 857 SMART dsp_5 156 295 IPR020422 GO:0006470|GO:0008138
Lapu1g01125 857 ProSitePatterns Tyrosine specific protein phosphatases active site. 240 250 IPR016130 GO:0016311|GO:0016791
Lapu1g01125 857 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 215 276 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01125 Lapu-Chr1 24291669 24297149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01125 2 192 Protein tyrosine phosphatase (PTP) family AT3G55270 63.542 7.78e-65 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01125 - - vum:124838930 1499.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01125 1 24291669 24297149 Lapu1g01125 1 24291669 24297149 ECH