Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01124 ATGGCTCCTACGAAGGTGGTCAATGCTAAAAAGGCTGATCCCAAAGCTCAGGCCTTGAAGACAGCTAAGGCTGTCAAATCAGGTGGCCAAGTGTTGAAGAAGAAAACAAAAAAGATCAGAACATCTGTTACATTTCACAGGCCAAAGACATTGAAGAAGGACAGGAACCCTAAGTATCCTCGCATTAGTGCTCCACCAAGAAATAAGTTGGACCACTACCAGATACTTAAGTTTCCTCTAACCACCGAGTCTGCAATGAAGAAAATTGAGGATAACAACACACTGGTTTTTATTGTTGATCTCCGTGCTGATAAAAAGAAGATTAAAGATGCTGTGAAGAAGATGTATGACATTCAGGCCAAGAAAGTAAATACTTTAATCAGGCCGGATGGAACTAAGAAAGCTTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAGATTGGTATCATCTAA 468 0.406 MAPTKVVNAKKADPKAQALKTAKAVKSGGQVLKKKTKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01124 155 Pfam Ribosomal protein L23, N-terminal domain 15 65 IPR005633 -
Lapu1g01124 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 8 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lapu1g01124 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Lapu1g01124 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lapu1g01124 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 GO:0019843
Lapu1g01124 155 FunFam 60S ribosomal protein L23a 34 155 - -
Lapu1g01124 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 72 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lapu1g01124 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Lapu1g01124 155 Gene3D - 36 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01124 Lapu-Chr1 24283214 24288105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01124 28 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 89.062 4.36e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01124 K02893 - gmx:100777933 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01124 1 24283214 24288105 Lapu1g01124 1 24283214 24288105 ECH