Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01122 ATGATGATATCAAGAGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTTTCGGAGGTGTCGGAGCCGCCGGAGTCGCCGTCGCCGTACCTGGACCCTGGCGCCGAGACCTCTGCGTCGCAGCAGGTGGAGCAGGAGGAGGAAATGGAGGAGCCCGAGGAGATCGAACCGCCGCCCGCGGCGGTTCCGTTTTCGCAACTCTTCGCTTGCGCTGACCGCTTTGATTGGTTCCTCATAACCGTCGGTTCCCTTGCTGCCGCGGCTCATGGCACCGCGCTCGTGGTTTACTTGCACTATTTCGCGAAGATCATCCACGTGCTGCGGATGGATCCTCAGCTCGGCACGTCACACGAGCAGTTTCACAGGTTCACGGAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTCGTTGCTGGTTGGATTGAGGTTTCATGTTGGATCTTGACGGGAGAACGGCAGACTGCTGTCATCAGGTCAAATTATGTTCAAGTACTGCTTAATCAAGATATGAGTTTTTTTGATACTTATGGGAACAATGGAGACATTGTGAGTCAAGTATTGAGTGATGTGTTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAACATGGCCACATTCTTCAGTGGTCTTGTCATTGGCCTCATCAATTGTTGGCAGATTGCTTTGATAACGTTAGCGACAGGACCATTTATTGTTGCTGCTGGAGGAATATCAAACATATTCCTCCATAGGCTTGCAGAGAATATCCAGGATGCTTATGCCGAAGCAGCTGGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTGTATGCATTTACAAATGAAACTTTGGCCAAGTATTCGTATGCAACATCATTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGTCTTGGTCTTGGATTTACATATGGTCTAGCAATATGCTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGGAAAAGCACATGGTGGTGAAATTATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGACTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGATTATTTGAGATGATAAGTCGATCACCCTCATCTGTTAATCATGAAGGCACCGCCCCTGATTCTGTGCAAGGAAATATAGAATTTCGTAATGTTTATTTCAGCTATTTGTCCCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACCGTGCCTGCTAAGAAAGCTGTAGCACTTGTAGGCAGAAATGGATCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGATTAGTCACCCAGGAGCCTGCTTTACTCAGTTTGAGTATAAGAGACAACATTGCTTATGGTAGGGATGCTACCATGGATCAAATTGAAGAGGCGGCTAAAATAGCACAAGCACATACATTTATCAGCTCATTAGAGAAAGCTTATGACTCACAGATTGGCAGGGCTGGTCTAGCTTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCTATTCTTCTGCTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAAGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACACATGATGAATTATTAACCCTGGATGGGTTATATGCAGAGCTTCTTCGATGCGAAGAGGCAACAAAACTTCCCAAGAGGATGCCTATTCGAAACTACAAGGAAACTGCAGGCTTCCAAATTGAAAAGGATTCTTCAAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGACAAAGTCACCCTCTCTTCAAAGAGTGTCTAATGTATCCCGACCTTCAGATGGCATCTTTAACTTGCAAGAATCACCAAAAGTCCGGAGCCCACCACCTGAGAATATGCTGGAAAATGGTCAGCTAATGGATGCAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTTCCAGAGTTACCAAAGATTGATGTTCATTCTGTGCATCGACAAATGTCAAATGAATCTGATCCTGAATCTCCGGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCCCATTCACAAACTTTTAGTAGACTACATAGTCATTCTGATGACGTTTCAGTTAGAATGAGAGAAACAAAGGGTGCACGGCACCAAAAACCGCCATCACTGCAGAAGCTGGCTGAGCTTAGTTTTACTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCGATCTTTGGCTCTTTCAATCCCCTTCTTGCTTATGTTATTGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACACTCATCACCAAGAACGGGAAGTAGACAAGTGGTGCCTGATCATTACCTGCATGGGTATTGTGACAGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACGGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTCGGATGGTTTGATGGTGAGGAGAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTGCGAGCTGCTTTTAGCAACAGGCTTTCCATATTTATACAGGACATTGCTGCAGTTATTGTTGGTCTTCTTATTGGTGCTTTGCTGCACTGGCGGTTAGCACTAGTGGCTTTTGCAACGCTTCCAATTCTCTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGAGGTATCCAGGAAATGCACCGAAAGGCATCTTTAGTCCTTGAAGATGCAGTTAGGAACATTTACACTGTTGTTGCTTTCTGTGCTGGTAATAAGGTAATGGAGCTCTATAGGCTGCAATTGAAGAAAATATTCAAGCAGAGCTTTCTACATGGGATGGCAATTGGTTTTGCATTTGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCTCTGCTACTTTGGTACACTGCAATATGCATAAAGCGAGGTTACATGGATCCACCTACTGCACTCAAAGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTAAAACGACGAAAATCCCTCATATCCGTGTTTGAAATTATAGACCGGGTTCCTAAAATTGATCCTGATGATGGCTCGGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTGGTATTGAGCAATTTTAGCCTCAAAGTCAATGGGGGTCAAACAGTTGCTATCGTGGGAGTTTCAGGATCAGGAAAGAGCACTATAATATCTTTGATAGAGAGATTTTATGATCCAGTTGCAGGCCAAGTTTTCCTGGATGGTAGGGATTTAAAGCTCTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTTGTTCAGCAGGAACCTATTATGTTCTCAACAACCATAAGGGAAAATATTTTATATGCAAGGCATAATGCCACTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCCCATCATTTCATTAGCAGCTTACCTCATGGTTATGACACTCATGTTGGGATGAGAGGCGTTGACTTAACCCAAGGACAGAAACAGAGAATTGCAATTGCTAGGGTAGTGCTGAAAAATGCCCCTATCTTATTGTTGGATGAATCTAGTTCATCAATTGAATCTGAGTCAAGCCGAGTGGTGCAAGAGGCTCTAGAAACGCTAATAATGGGAAACAAGACCACTATTTTAATAGCACACAGGGCTGCAATGATGAGGCATGTAGACAATATTGTAGTGCTTAATGGTGGACGGATAGTGGAGGAAGGCAGTCATGATTCACTGGTTGCAAAGAATGGTTTGTATGTCCGATTGATGCAACCTCATTTTGGTAAGACTTTGCGTCAACATCGACTTGTTTAG 4209 0.4315 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEQEEEMEEPEEIEPPPAAVPFSQLFACADRFDWFLITVGSLAAAAHGTALVVYLHYFAKIIHVLRMDPQLGTSHEQFHRFTELALTIVYIAVGVFVAGWIEVSCWILTGERQTAVIRSNYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAAGIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSPSSVNHEGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAQAHTFISSLEKAYDSQIGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIKNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEATKLPKRMPIRNYKETAGFQIEKDSSSHSFKEPSSPKMTKSPSLQRVSNVSRPSDGIFNLQESPKVRSPPPENMLENGQLMDAADKEPSIRRQDSFEMRLPELPKIDVHSVHRQMSNESDPESPVSPLLTSDPKSERSHSQTFSRLHSHSDDVSVRMRETKGARHQKPPSLQKLAELSFTEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDTHHQEREVDKWCLIITCMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDGEENSADNLSMRLANDATFVRAAFSNRLSIFIQDIAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKRGYMDPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDGSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVFLDGRDLKLYNLRWLRSHLGLVQQEPIMFSTTIRENILYARHNATEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTQGQKQRIAIARVVLKNAPILLLDESSSSIESESSRVVQEALETLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKTLRQHRLV* 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01122 1402 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016020
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 675 702 - -
Lapu1g01122 1402 FunFam ABC transporter B family member 6 770 998 - -
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 665 730 - -
Lapu1g01122 1402 FunFam ABC transporter B family member 20 70 409 - -
Lapu1g01122 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu1g01122 1402 Gene3D - 1151 1390 IPR027417 -
Lapu1g01122 1402 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 85 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu1g01122 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1389 IPR027417 -
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 761 781 - -
Lapu1g01122 1402 Gene3D ABC transporter type 1, transmembrane domain 1006 1150 IPR036640 GO:0005524|GO:0016020
Lapu1g01122 1402 Gene3D ABC transporter type 1, transmembrane domain 769 993 IPR036640 GO:0005524|GO:0016020
Lapu1g01122 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1153 1390 IPR003439 GO:0005524
Lapu1g01122 1402 PANTHER ABC TRANSPORTER B FAMILY 46 840 IPR039421 -
Lapu1g01122 1402 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Lapu1g01122 1402 FunFam ABC transporter B family member 20 397 644 - -
Lapu1g01122 1402 Pfam ABC transporter transmembrane region 835 1099 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu1g01122 1402 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu1g01122 1402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 641 IPR027417 -
Lapu1g01122 1402 FunFam ABC transporter B family member 6 1000 1150 - -
Lapu1g01122 1402 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1136 - -
Lapu1g01122 1402 SMART AAA_5 434 760 IPR003593 GO:0016887
Lapu1g01122 1402 SMART AAA_5 1180 1367 IPR003593 GO:0016887
Lapu1g01122 1402 Pfam ABC transporter 1171 1318 IPR003439 GO:0005524
Lapu1g01122 1402 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 756 813 - -
Lapu1g01122 1402 Gene3D ABC transporter type 1, transmembrane domain 70 658 IPR036640 GO:0005524|GO:0016020
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 782 810 - -
Lapu1g01122 1402 Gene3D - 397 644 IPR027417 -
Lapu1g01122 1402 FunFam ABC transporter B family member 20 1143 1392 - -
Lapu1g01122 1402 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Lapu1g01122 1402 SUPERFAMILY ABC transporter transmembrane region 817 1138 IPR036640 GO:0005524|GO:0016020
Lapu1g01122 1402 MobiDBLite consensus disorder prediction 11 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01122 Lapu-Chr1 24264360 24273791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01122 53 699 Calmodulin-binding Proteins AT2G36910 43.161 3.20e-163 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01122 K05658 - gmx:100789116 2567.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01122 1 24264360 24273791 Lapu1g01122 1 24264360 24273791 ECH