Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01118 ATGAAGAGAGAGAGGGAGGTCGATAGTTTAACCATGGCCAATTGCTTGATGCTGCTCTCTCGTGGAGATGAATTTGAGGCCACATACACAAGCTCTTCTATGATCACCAACCGTGTCTTTGAGTGCAAGACATGCAACAGGCAATTCCCTTCGTTTCAAGCACTTGGTGGCCACAGGGCTAGTCACAAGAAACCTAGGTTGATTGCAGGAGATAATATTGAAGGCCAGTTGCTTCATGATTCACCCCCAAAGCCTAAGACTCACGAGTGCTCCATTTGTGGATTGGAGTTTGCTATAGGGCAAGCCCTGGGTGGCCACATGAGGAGACACAGAACTGCGAATTTGAGTGGAAACCTGCACAATTCCACGACTATCAGCAGCAGTAGTGGTGGTAGCAGTATCGATTCTTCAACCAAGAACAAAGTTGGCAACAAGAGAGTTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATTGGAAAACCAACTACTTTGGTTGATTATTTGTATTGA 534 0.4457 MKREREVDSLTMANCLMLLSRGDEFEATYTSSSMITNRVFECKTCNRQFPSFQALGGHRASHKKPRLIAGDNIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRTANLSGNLHNSTTISSSSGGSSIDSSTKNKVGNKRVLVLDLNLTPFENDLEILKIGKPTTLVDYLY* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01118 177 Gene3D Classic Zinc Finger 37 110 - -
Lapu1g01118 177 Pfam C2H2-type zinc finger 39 65 - -
Lapu1g01118 177 Pfam C2H2-type zinc finger 88 112 - -
Lapu1g01118 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Lapu1g01118 177 PANTHER ZINC FINGER PROTEIN ZAT5 5 159 - -
Lapu1g01118 177 SUPERFAMILY beta-beta-alpha zinc fingers 38 110 IPR036236 -
Lapu1g01118 177 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Lapu1g01118 177 MobiDBLite consensus disorder prediction 115 139 - -
Lapu1g01118 177 SMART c2h2final6 88 110 IPR013087 -
Lapu1g01118 177 SMART c2h2final6 40 62 IPR013087 -
Lapu1g01118 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Lapu1g01118 177 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01118 Lapu-Chr1 24242393 24242926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01118 12 168 C2H2 Transcription Factor Family AT2G28710 44.643 3.35e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu1g01118 zf-C2H2_6 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01118 - - gmx:100781134 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01118 1 24242393 24242926 Lapu1g01118 1 24242393 24242926 ECH