Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g01108 ATGGCCGCCGGCATCGACATGTCCCTCGACGACATTATGAGGTGCTCCGCCTCCGCCGCGGCGTCGCGTAGGCGATTCACGTTTGTTCGCAAGCCGGCCAGAACGACGCCGTACCCCATCCCGCATGCAAGGCAACACGACAGAATGATTCCAGAAATGGTTTTTGAAGATGACGGTGCCGCTATGATCGAGAGTGGCACCAAACTCTTGATATCCAACTTGGATCATGGAGTGTCAAACGGTGATATCAAGCTGCTGTTCTCCGAAGAGGGTGAGTTGAAAAGATACTCCATTCATTATGATCAGAATGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCGTGAGGCACTCTGATGCTTTATCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAGCCATTGCAAATTGAACTCGTTGGAACTAGTACTCCTGCTGTTGCTCCTCTTCGTCAAAATAACTTAATGGGAAGACCAAATGATGCGCTTCTAAGCAAAGGAGGAAGAGTTGGAGGTAGGGGGTTCCACAATGACTATGTACAGGGCCACCTTCCGAGGGGCCGTGGAGAAGAGAAGGGCTATATTCGAAAGTTATATTTTAGAGATCTTGATCATGCCTTGGAGAGGTCTCACCGCGTTACGAGAGACCACGCAAAAGTAAAGAGCAATAATAGAAAAGTGACTGCTAAGGATCTTGATGATGACTTGGAGAGGTATCACCTAGAGGCTAAGCAGATAAAAAATCAGAATGGAAAGTGA 765 0.4745 MAAGIDMSLDDIMRCSASAAASRRRFTFVRKPARTTPYPIPHARQHDRMIPEMVFEDDGAAMIESGTKLLISNLDHGVSNGDIKLLFSEEGELKRYSIHYDQNGRSKGTAEVVFVRHSDALSAIKKYNNMRLDGKPLQIELVGTSTPAVAPLRQNNLMGRPNDALLSKGGRVGGRGFHNDYVQGHLPRGRGEEKGYIRKLYFRDLDHALERSHRVTRDHAKVKSNNRKVTAKDLDDDLERYHLEAKQIKNQNGK* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g01108 254 SUPERFAMILY RNA-binding domain, RBD 62 148 IPR035979 GO:0003676
Lapu1g01108 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 144 IPR000504 GO:0003723
Lapu1g01108 254 Gene3D - 56 198 IPR012677 -
Lapu1g01108 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 137 IPR000504 GO:0003723
Lapu1g01108 254 CDD RRM_THOC4 67 141 - -
Lapu1g01108 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 245 - -
Lapu1g01108 254 SMART rrm1_1 68 140 IPR000504 GO:0003723
Lapu1g01108 254 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g01108 Lapu-Chr1 24178893 24181520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g01108 66 142 Eukaryotic Initiation Factors Gene Family AT2G23350 32.468 7.48e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g01108 K12881 - gmx:100785926 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g01108 1 24178893 24181520 Lapu1g01108 1 24178893 24181520 ECH